Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1232

Experiment: 6 day starvation, 30C

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1230 and DvMF_1231 are separated by 125 nucleotidesDvMF_1231 and DvMF_1232 overlap by 4 nucleotidesDvMF_1232 and DvMF_1233 overlap by 1 nucleotides DvMF_1230: DvMF_1230 - molybdenum cofactor biosynthesis protein A (RefSeq), at 1,518,320 to 1,519,405 _1230 DvMF_1231: DvMF_1231 - Molybdopterin-guanine dinucleotide biosynthesis protein A-like protein (RefSeq), at 1,519,531 to 1,520,403 _1231 DvMF_1232: DvMF_1232 - formate dehydrogenase accessory protein FdhD, putative (RefSeq), at 1,520,400 to 1,521,224 _1232 DvMF_1233: DvMF_1233 - formate dehydrogenase accessory protein (RefSeq), at 1,521,224 to 1,522,135 _1233 Position (kb) 1520 1521 1522Strain fitness (log2 ratio) -2 -1 0 1at 1519.855 kb on + strand, within DvMF_1231at 1519.999 kb on + strand, within DvMF_1231at 1520.331 kb on - strandat 1520.494 kb on - strand, within DvMF_1232at 1520.689 kb on - strand, within DvMF_1232at 1520.762 kb on - strand, within DvMF_1232at 1520.969 kb on + strand, within DvMF_1232at 1521.041 kb on - strand, within DvMF_1232at 1521.238 kb on - strandat 1521.356 kb on + strand, within DvMF_1233at 1521.512 kb on - strand, within DvMF_1233at 1521.681 kb on - strand, within DvMF_1233at 1521.751 kb on - strand, within DvMF_1233at 1521.803 kb on - strand, within DvMF_1233at 1521.846 kb on - strand, within DvMF_1233at 1522.071 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 30C
remove
1,519,855 + DvMF_1231 0.37 -2.4
1,519,999 + DvMF_1231 0.54 -1.3
1,520,331 - +0.0
1,520,494 - DvMF_1232 0.11 +0.5
1,520,689 - DvMF_1232 0.35 +0.5
1,520,762 - DvMF_1232 0.44 +0.4
1,520,969 + DvMF_1232 0.69 +0.9
1,521,041 - DvMF_1232 0.78 +0.1
1,521,238 - +1.1
1,521,356 + DvMF_1233 0.14 +0.8
1,521,512 - DvMF_1233 0.32 +0.8
1,521,681 - DvMF_1233 0.50 +0.3
1,521,751 - DvMF_1233 0.58 +0.6
1,521,803 - DvMF_1233 0.63 +0.8
1,521,846 - DvMF_1233 0.68 +0.7
1,522,071 + +0.3

Or see this region's nucleotide sequence