Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0167

Experiment: 6 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0166 and DvMF_0167 are separated by 135 nucleotidesDvMF_0167 and DvMF_0168 are separated by 520 nucleotides DvMF_0166: DvMF_0166 - Formate dehydrogenase (RefSeq), at 180,349 to 182,484 _0166 DvMF_0167: DvMF_0167 - RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq), at 182,620 to 184,020 _0167 DvMF_0168: DvMF_0168 - hypothetical protein (RefSeq), at 184,541 to 185,011 _0168 Position (kb) 182 183 184 185Strain fitness (log2 ratio) -1 0 1 2 3at 181.697 kb on + strand, within DvMF_0166at 181.705 kb on - strand, within DvMF_0166at 181.850 kb on - strand, within DvMF_0166at 181.850 kb on - strand, within DvMF_0166at 181.871 kb on + strand, within DvMF_0166at 181.997 kb on + strand, within DvMF_0166at 181.999 kb on + strand, within DvMF_0166at 182.054 kb on - strand, within DvMF_0166at 182.427 kb on - strandat 182.438 kb on + strandat 182.438 kb on + strandat 182.546 kb on + strandat 182.554 kb on - strandat 182.818 kb on + strand, within DvMF_0167at 182.913 kb on - strand, within DvMF_0167at 182.972 kb on - strand, within DvMF_0167at 182.982 kb on - strand, within DvMF_0167at 183.014 kb on - strand, within DvMF_0167at 183.032 kb on - strand, within DvMF_0167at 183.214 kb on + strand, within DvMF_0167at 183.261 kb on - strand, within DvMF_0167at 183.437 kb on - strand, within DvMF_0167at 183.536 kb on + strand, within DvMF_0167at 184.221 kb on + strandat 184.221 kb on + strandat 184.290 kb on - strandat 184.351 kb on + strandat 184.351 kb on + strandat 184.351 kb on + strandat 184.373 kb on - strandat 184.542 kb on - strandat 184.695 kb on + strand, within DvMF_0168at 184.857 kb on + strand, within DvMF_0168at 184.862 kb on + strand, within DvMF_0168

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 30C
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181,697 + DvMF_0166 0.63 +0.8
181,705 - DvMF_0166 0.63 +0.6
181,850 - DvMF_0166 0.70 +0.4
181,850 - DvMF_0166 0.70 +0.6
181,871 + DvMF_0166 0.71 +0.0
181,997 + DvMF_0166 0.77 +0.6
181,999 + DvMF_0166 0.77 +0.7
182,054 - DvMF_0166 0.80 +0.3
182,427 - +0.5
182,438 + +0.6
182,438 + +0.9
182,546 + +0.5
182,554 - +0.4
182,818 + DvMF_0167 0.14 +0.6
182,913 - DvMF_0167 0.21 +0.3
182,972 - DvMF_0167 0.25 +0.6
182,982 - DvMF_0167 0.26 +1.8
183,014 - DvMF_0167 0.28 +0.4
183,032 - DvMF_0167 0.29 +1.2
183,214 + DvMF_0167 0.42 +0.9
183,261 - DvMF_0167 0.46 +3.3
183,437 - DvMF_0167 0.58 +0.4
183,536 + DvMF_0167 0.65 +1.5
184,221 + +0.6
184,221 + +0.6
184,290 - +0.8
184,351 + +1.3
184,351 + +0.8
184,351 + +0.7
184,373 - -0.0
184,542 - +1.2
184,695 + DvMF_0168 0.33 +0.3
184,857 + DvMF_0168 0.67 +1.2
184,862 + DvMF_0168 0.68 +0.9

Or see this region's nucleotide sequence