Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0116

Experiment: 6 day starvation, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0115 and DvMF_0116 are separated by 402 nucleotidesDvMF_0116 and DvMF_0117 are separated by 243 nucleotides DvMF_0115: DvMF_0115 - hypothetical protein (RefSeq), at 125,637 to 126,578 _0115 DvMF_0116: DvMF_0116 - ferric uptake regulator, Fur family (RefSeq), at 126,981 to 127,409 _0116 DvMF_0117: DvMF_0117 - ABC-3 protein (RefSeq), at 127,653 to 128,483 _0117 Position (kb) 126 127 128Strain fitness (log2 ratio) -1 0 1 2at 126.089 kb on - strand, within DvMF_0115at 126.463 kb on - strand, within DvMF_0115at 126.481 kb on + strand, within DvMF_0115at 126.514 kb on + strandat 126.999 kb on + strandat 127.234 kb on - strand, within DvMF_0116at 127.252 kb on - strand, within DvMF_0116at 127.287 kb on - strand, within DvMF_0116at 127.311 kb on + strand, within DvMF_0116at 127.314 kb on - strand, within DvMF_0116at 127.457 kb on + strandat 127.488 kb on - strandat 127.597 kb on + strandat 127.719 kb on - strandat 127.719 kb on - strandat 127.778 kb on + strand, within DvMF_0117at 128.111 kb on + strand, within DvMF_0117at 128.303 kb on - strand, within DvMF_0117at 128.310 kb on + strand, within DvMF_0117at 128.390 kb on + strand, within DvMF_0117

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Per-strain Table

Position Strand Gene LocusTag Fraction 6 day starvation, 30C
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126,089 - DvMF_0115 0.48 +0.3
126,463 - DvMF_0115 0.88 +0.2
126,481 + DvMF_0115 0.90 +0.6
126,514 + +0.7
126,999 + +1.6
127,234 - DvMF_0116 0.59 +0.7
127,252 - DvMF_0116 0.63 +0.5
127,287 - DvMF_0116 0.71 +0.8
127,311 + DvMF_0116 0.77 +0.9
127,314 - DvMF_0116 0.78 +0.4
127,457 + +0.8
127,488 - +0.7
127,597 + +1.1
127,719 - +1.0
127,719 - +0.8
127,778 + DvMF_0117 0.15 +1.3
128,111 + DvMF_0117 0.55 +1.7
128,303 - DvMF_0117 0.78 +2.5
128,310 + DvMF_0117 0.79 -0.0
128,390 + DvMF_0117 0.89 +1.0

Or see this region's nucleotide sequence