Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5947

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_5946 and Pf6N2E2_5947 are separated by 138 nucleotidesPf6N2E2_5947 and Pf6N2E2_5948 are separated by 105 nucleotidesPf6N2E2_5948 and Pf6N2E2_5949 are separated by 83 nucleotidesPf6N2E2_5949 and Pf6N2E2_5950 are separated by 18 nucleotides Pf6N2E2_5946 - Periplasmic serine proteases (ClpP class), at 6,767,267 to 6,768,256 _5946 Pf6N2E2_5947 - FIG146278: Maf/YceF/YhdE family protein, at 6,768,395 to 6,768,973 _5947 Pf6N2E2_5948 - COG1399 protein, clustered with ribosomal protein L32p, at 6,769,079 to 6,769,606 _5948 Pf6N2E2_5949 - hypothetical protein, at 6,769,690 to 6,769,929 _5949 Pf6N2E2_5950 - Phosphate:acyl-ACP acyltransferase PlsX, at 6,769,948 to 6,770,817 _5950 Position (kb) 6768 6769Strain fitness (log2 ratio) -2 -1 0 1 2at 6767.416 kb on + strand, within Pf6N2E2_5946at 6767.416 kb on + strand, within Pf6N2E2_5946at 6767.416 kb on + strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.417 kb on - strand, within Pf6N2E2_5946at 6767.420 kb on + strand, within Pf6N2E2_5946at 6767.421 kb on - strand, within Pf6N2E2_5946at 6767.421 kb on - strand, within Pf6N2E2_5946at 6767.493 kb on - strand, within Pf6N2E2_5946at 6767.493 kb on - strand, within Pf6N2E2_5946at 6767.614 kb on + strand, within Pf6N2E2_5946at 6767.657 kb on + strand, within Pf6N2E2_5946at 6767.705 kb on + strand, within Pf6N2E2_5946at 6767.705 kb on + strand, within Pf6N2E2_5946at 6767.705 kb on + strand, within Pf6N2E2_5946at 6767.705 kb on + strand, within Pf6N2E2_5946at 6767.706 kb on - strand, within Pf6N2E2_5946at 6767.706 kb on - strand, within Pf6N2E2_5946at 6767.741 kb on + strand, within Pf6N2E2_5946at 6767.741 kb on + strand, within Pf6N2E2_5946at 6767.741 kb on + strandat 6767.744 kb on + strand, within Pf6N2E2_5946at 6767.744 kb on + strand, within Pf6N2E2_5946at 6767.744 kb on + strand, within Pf6N2E2_5946at 6767.745 kb on - strand, within Pf6N2E2_5946at 6767.745 kb on - strand, within Pf6N2E2_5946at 6767.745 kb on - strand, within Pf6N2E2_5946at 6767.745 kb on - strand, within Pf6N2E2_5946at 6767.771 kb on + strand, within Pf6N2E2_5946at 6767.771 kb on + strand, within Pf6N2E2_5946at 6767.771 kb on + strand, within Pf6N2E2_5946at 6767.771 kb on + strand, within Pf6N2E2_5946at 6767.772 kb on - strand, within Pf6N2E2_5946at 6767.772 kb on - strand, within Pf6N2E2_5946at 6767.823 kb on - strand, within Pf6N2E2_5946at 6767.845 kb on + strand, within Pf6N2E2_5946at 6767.845 kb on + strand, within Pf6N2E2_5946at 6767.845 kb on + strand, within Pf6N2E2_5946at 6767.870 kb on + strand, within Pf6N2E2_5946at 6767.870 kb on + strand, within Pf6N2E2_5946at 6767.870 kb on + strand, within Pf6N2E2_5946at 6767.870 kb on + strand, within Pf6N2E2_5946at 6767.870 kb on + strand, within Pf6N2E2_5946at 6767.870 kb on + strand, within Pf6N2E2_5946at 6767.871 kb on - strand, within Pf6N2E2_5946at 6767.872 kb on + strand, within Pf6N2E2_5946at 6767.872 kb on + strand, within Pf6N2E2_5946at 6767.872 kb on + strand, within Pf6N2E2_5946at 6767.888 kb on - strand, within Pf6N2E2_5946at 6767.888 kb on - strand, within Pf6N2E2_5946at 6767.888 kb on - strand, within Pf6N2E2_5946at 6768.427 kb on + strandat 6768.427 kb on + strandat 6768.427 kb on + strandat 6768.427 kb on + strandat 6768.427 kb on + strandat 6768.428 kb on - strandat 6768.495 kb on - strand, within Pf6N2E2_5947at 6768.495 kb on - strand, within Pf6N2E2_5947at 6768.495 kb on - strand, within Pf6N2E2_5947at 6768.540 kb on + strand, within Pf6N2E2_5947at 6768.540 kb on + strand, within Pf6N2E2_5947at 6768.541 kb on - strand, within Pf6N2E2_5947at 6768.541 kb on - strand, within Pf6N2E2_5947at 6768.562 kb on - strand, within Pf6N2E2_5947at 6768.604 kb on + strand, within Pf6N2E2_5947at 6768.604 kb on + strand, within Pf6N2E2_5947at 6768.605 kb on - strand, within Pf6N2E2_5947at 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.959 kb on + strandat 6768.960 kb on - strandat 6768.962 kb on + strandat 6769.003 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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6,767,416 + Pf6N2E2_5946 0.15 +1.3
6,767,416 + Pf6N2E2_5946 0.15 -0.9
6,767,416 + Pf6N2E2_5946 0.15 -0.3
6,767,417 - Pf6N2E2_5946 0.15 -0.2
6,767,417 - Pf6N2E2_5946 0.15 +0.7
6,767,417 - Pf6N2E2_5946 0.15 +0.7
6,767,417 - Pf6N2E2_5946 0.15 -0.4
6,767,417 - Pf6N2E2_5946 0.15 -1.2
6,767,417 - Pf6N2E2_5946 0.15 -1.5
6,767,417 - Pf6N2E2_5946 0.15 +0.2
6,767,417 - Pf6N2E2_5946 0.15 +1.5
6,767,417 - Pf6N2E2_5946 0.15 +0.1
6,767,417 - Pf6N2E2_5946 0.15 +0.6
6,767,420 + Pf6N2E2_5946 0.15 +0.6
6,767,421 - Pf6N2E2_5946 0.16 +0.7
6,767,421 - Pf6N2E2_5946 0.16 -0.1
6,767,493 - Pf6N2E2_5946 0.23 -0.3
6,767,493 - Pf6N2E2_5946 0.23 -0.3
6,767,614 + Pf6N2E2_5946 0.35 +0.4
6,767,657 + Pf6N2E2_5946 0.39 +0.3
6,767,705 + Pf6N2E2_5946 0.44 +0.7
6,767,705 + Pf6N2E2_5946 0.44 -0.4
6,767,705 + Pf6N2E2_5946 0.44 +0.7
6,767,705 + Pf6N2E2_5946 0.44 +1.0
6,767,706 - Pf6N2E2_5946 0.44 +1.9
6,767,706 - Pf6N2E2_5946 0.44 -1.8
6,767,741 + Pf6N2E2_5946 0.48 -0.5
6,767,741 + Pf6N2E2_5946 0.48 +0.3
6,767,741 + +0.4
6,767,744 + Pf6N2E2_5946 0.48 +0.3
6,767,744 + Pf6N2E2_5946 0.48 -0.0
6,767,744 + Pf6N2E2_5946 0.48 +0.4
6,767,745 - Pf6N2E2_5946 0.48 -0.2
6,767,745 - Pf6N2E2_5946 0.48 +0.3
6,767,745 - Pf6N2E2_5946 0.48 +1.7
6,767,745 - Pf6N2E2_5946 0.48 +0.3
6,767,771 + Pf6N2E2_5946 0.51 -2.0
6,767,771 + Pf6N2E2_5946 0.51 -1.5
6,767,771 + Pf6N2E2_5946 0.51 +0.4
6,767,771 + Pf6N2E2_5946 0.51 -0.3
6,767,772 - Pf6N2E2_5946 0.51 -0.8
6,767,772 - Pf6N2E2_5946 0.51 -0.6
6,767,823 - Pf6N2E2_5946 0.56 +0.3
6,767,845 + Pf6N2E2_5946 0.58 +0.1
6,767,845 + Pf6N2E2_5946 0.58 +1.1
6,767,845 + Pf6N2E2_5946 0.58 +0.6
6,767,870 + Pf6N2E2_5946 0.61 +1.1
6,767,870 + Pf6N2E2_5946 0.61 -0.2
6,767,870 + Pf6N2E2_5946 0.61 +0.3
6,767,870 + Pf6N2E2_5946 0.61 -0.1
6,767,870 + Pf6N2E2_5946 0.61 +0.5
6,767,870 + Pf6N2E2_5946 0.61 -0.1
6,767,871 - Pf6N2E2_5946 0.61 -2.0
6,767,872 + Pf6N2E2_5946 0.61 +0.5
6,767,872 + Pf6N2E2_5946 0.61 +1.7
6,767,872 + Pf6N2E2_5946 0.61 -0.3
6,767,888 - Pf6N2E2_5946 0.63 +1.0
6,767,888 - Pf6N2E2_5946 0.63 -1.2
6,767,888 - Pf6N2E2_5946 0.63 +0.7
6,768,427 + -0.4
6,768,427 + -1.6
6,768,427 + +1.7
6,768,427 + +1.0
6,768,427 + +0.2
6,768,428 - +0.1
6,768,495 - Pf6N2E2_5947 0.17 -1.2
6,768,495 - Pf6N2E2_5947 0.17 -2.4
6,768,495 - Pf6N2E2_5947 0.17 -0.8
6,768,540 + Pf6N2E2_5947 0.25 -1.1
6,768,540 + Pf6N2E2_5947 0.25 -1.2
6,768,541 - Pf6N2E2_5947 0.25 +0.1
6,768,541 - Pf6N2E2_5947 0.25 -2.2
6,768,562 - Pf6N2E2_5947 0.29 +0.1
6,768,604 + Pf6N2E2_5947 0.36 -1.3
6,768,604 + Pf6N2E2_5947 0.36 -0.7
6,768,605 - Pf6N2E2_5947 0.36 -0.8
6,768,959 + +0.5
6,768,959 + -1.2
6,768,959 + -0.3
6,768,959 + -0.7
6,768,959 + -0.8
6,768,960 - +1.1
6,768,962 + +0.1
6,769,003 + -0.2

Or see this region's nucleotide sequence