Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5300 and Pf6N2E2_5301 are separated by 74 nucleotides Pf6N2E2_5301 and Pf6N2E2_5302 are separated by 315 nucleotides Pf6N2E2_5302 and Pf6N2E2_5303 overlap by 4 nucleotides Pf6N2E2_5303 and Pf6N2E2_5304 are separated by 506 nucleotides
Pf6N2E2_5300 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 6,094,403 to 6,095,794
_5300
Pf6N2E2_5301 - FIG00957554: hypothetical protein, at 6,095,869 to 6,096,129
_5301
Pf6N2E2_5302 - FIG00954263: hypothetical protein, at 6,096,445 to 6,096,945
_5302
Pf6N2E2_5303 - FIG00954638: hypothetical protein, at 6,096,942 to 6,097,259
_5303
Pf6N2E2_5304 - ribosomal subunit interface protein, putative, at 6,097,766 to 6,098,176
_5304
Position (kb)
6096
6097 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 6095.558 kb on + strand, within Pf6N2E2_5300 at 6095.558 kb on + strand, within Pf6N2E2_5300 at 6095.564 kb on + strand, within Pf6N2E2_5300 at 6095.637 kb on + strand, within Pf6N2E2_5300 at 6095.694 kb on + strand at 6095.786 kb on + strand at 6095.786 kb on + strand at 6095.789 kb on + strand at 6095.792 kb on + strand at 6095.793 kb on - strand at 6095.793 kb on - strand at 6095.829 kb on + strand at 6095.829 kb on + strand at 6095.830 kb on - strand at 6095.830 kb on - strand at 6095.830 kb on - strand at 6095.830 kb on - strand at 6095.830 kb on - strand at 6095.866 kb on + strand at 6095.866 kb on + strand at 6095.871 kb on - strand at 6095.957 kb on + strand, within Pf6N2E2_5301 at 6095.957 kb on + strand, within Pf6N2E2_5301 at 6095.957 kb on + strand, within Pf6N2E2_5301 at 6095.958 kb on - strand, within Pf6N2E2_5301 at 6095.958 kb on - strand, within Pf6N2E2_5301 at 6095.958 kb on - strand, within Pf6N2E2_5301 at 6095.958 kb on - strand, within Pf6N2E2_5301 at 6095.958 kb on - strand, within Pf6N2E2_5301 at 6095.958 kb on - strand, within Pf6N2E2_5301 at 6096.025 kb on + strand, within Pf6N2E2_5301 at 6096.026 kb on - strand, within Pf6N2E2_5301 at 6096.026 kb on - strand, within Pf6N2E2_5301 at 6096.112 kb on + strand at 6096.112 kb on + strand at 6096.112 kb on + strand at 6096.112 kb on + strand at 6096.112 kb on + strand at 6096.113 kb on - strand at 6096.113 kb on - strand at 6096.113 kb on - strand at 6096.113 kb on - strand at 6096.113 kb on - strand at 6096.198 kb on - strand at 6096.231 kb on + strand at 6096.231 kb on + strand at 6096.232 kb on - strand at 6096.232 kb on - strand at 6096.236 kb on + strand at 6096.236 kb on + strand at 6096.430 kb on + strand at 6096.431 kb on - strand at 6096.431 kb on - strand at 6096.439 kb on + strand at 6096.439 kb on + strand at 6096.439 kb on + strand at 6096.439 kb on + strand at 6096.439 kb on + strand at 6096.439 kb on + strand at 6096.439 kb on + strand at 6096.439 kb on + strand at 6096.440 kb on - strand at 6096.440 kb on - strand at 6096.440 kb on - strand at 6096.440 kb on - strand at 6096.440 kb on - strand at 6096.676 kb on + strand, within Pf6N2E2_5302 at 6096.676 kb on + strand, within Pf6N2E2_5302 at 6096.676 kb on + strand, within Pf6N2E2_5302 at 6096.677 kb on - strand, within Pf6N2E2_5302 at 6096.677 kb on - strand, within Pf6N2E2_5302 at 6096.677 kb on - strand, within Pf6N2E2_5302 at 6096.677 kb on - strand, within Pf6N2E2_5302 at 6096.677 kb on - strand, within Pf6N2E2_5302 at 6096.715 kb on + strand, within Pf6N2E2_5302 at 6096.715 kb on + strand, within Pf6N2E2_5302 at 6096.715 kb on + strand, within Pf6N2E2_5302 at 6096.716 kb on - strand, within Pf6N2E2_5302 at 6096.716 kb on - strand, within Pf6N2E2_5302 at 6096.716 kb on - strand, within Pf6N2E2_5302 at 6096.716 kb on - strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.793 kb on + strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.794 kb on - strand, within Pf6N2E2_5302 at 6096.845 kb on - strand, within Pf6N2E2_5302 at 6096.943 kb on + strand at 6096.943 kb on + strand at 6097.213 kb on + strand, within Pf6N2E2_5303 at 6097.419 kb on + strand at 6097.420 kb on - strand at 6097.420 kb on - strand at 6097.429 kb on + strand at 6097.429 kb on + strand at 6097.429 kb on + strand at 6097.429 kb on + strand at 6097.430 kb on - strand at 6097.430 kb on - strand at 6097.430 kb on - strand at 6097.529 kb on + strand at 6097.573 kb on - strand at 6097.637 kb on + strand at 6097.638 kb on - strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.651 kb on + strand at 6097.652 kb on - strand at 6097.700 kb on + strand at 6097.744 kb on + strand at 6097.745 kb on - strand at 6097.753 kb on + strand at 6097.765 kb on + strand at 6097.765 kb on + strand at 6097.765 kb on + strand at 6097.766 kb on - strand at 6097.766 kb on - strand at 6097.795 kb on + strand at 6097.796 kb on - strand at 6097.796 kb on - strand at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.831 kb on + strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.832 kb on - strand, within Pf6N2E2_5304 at 6097.834 kb on + strand, within Pf6N2E2_5304 at 6097.834 kb on + strand, within Pf6N2E2_5304 at 6097.835 kb on - strand, within Pf6N2E2_5304 at 6097.835 kb on - strand, within Pf6N2E2_5304 at 6097.835 kb on - strand, within Pf6N2E2_5304
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 6,095,558 + Pf6N2E2_5300 0.83 -0.7 6,095,558 + Pf6N2E2_5300 0.83 +0.1 6,095,564 + Pf6N2E2_5300 0.83 -1.6 6,095,637 + Pf6N2E2_5300 0.89 -0.1 6,095,694 + +0.1 6,095,786 + -0.5 6,095,786 + -0.6 6,095,789 + +0.7 6,095,792 + +0.4 6,095,793 - +0.9 6,095,793 - -0.1 6,095,829 + -0.2 6,095,829 + -0.1 6,095,830 - -0.4 6,095,830 - -0.0 6,095,830 - +0.6 6,095,830 - +0.4 6,095,830 - +0.4 6,095,866 + +0.4 6,095,866 + -0.6 6,095,871 - +0.4 6,095,957 + Pf6N2E2_5301 0.34 -0.1 6,095,957 + Pf6N2E2_5301 0.34 -0.6 6,095,957 + Pf6N2E2_5301 0.34 -0.3 6,095,958 - Pf6N2E2_5301 0.34 -0.4 6,095,958 - Pf6N2E2_5301 0.34 -1.2 6,095,958 - Pf6N2E2_5301 0.34 -0.1 6,095,958 - Pf6N2E2_5301 0.34 +0.3 6,095,958 - Pf6N2E2_5301 0.34 +0.4 6,095,958 - Pf6N2E2_5301 0.34 -1.0 6,096,025 + Pf6N2E2_5301 0.60 +0.6 6,096,026 - Pf6N2E2_5301 0.60 +0.1 6,096,026 - Pf6N2E2_5301 0.60 +0.3 6,096,112 + -1.1 6,096,112 + +0.9 6,096,112 + -0.4 6,096,112 + -1.2 6,096,112 + +1.0 6,096,113 - -0.9 6,096,113 - +0.6 6,096,113 - +0.9 6,096,113 - +1.1 6,096,113 - -0.7 6,096,198 - -0.2 6,096,231 + +0.1 6,096,231 + -0.4 6,096,232 - +1.7 6,096,232 - -0.4 6,096,236 + +0.9 6,096,236 + +0.8 6,096,430 + +0.6 6,096,431 - +0.4 6,096,431 - +1.2 6,096,439 + -0.5 6,096,439 + +0.4 6,096,439 + +0.0 6,096,439 + -0.3 6,096,439 + +0.5 6,096,439 + +0.1 6,096,439 + -1.2 6,096,439 + -0.2 6,096,440 - +0.8 6,096,440 - -1.1 6,096,440 - -0.3 6,096,440 - +0.6 6,096,440 - +0.4 6,096,676 + Pf6N2E2_5302 0.46 -0.3 6,096,676 + Pf6N2E2_5302 0.46 -0.1 6,096,676 + Pf6N2E2_5302 0.46 -0.9 6,096,677 - Pf6N2E2_5302 0.46 -0.4 6,096,677 - Pf6N2E2_5302 0.46 -0.1 6,096,677 - Pf6N2E2_5302 0.46 +0.2 6,096,677 - Pf6N2E2_5302 0.46 -0.8 6,096,677 - Pf6N2E2_5302 0.46 -0.4 6,096,715 + Pf6N2E2_5302 0.54 -1.7 6,096,715 + Pf6N2E2_5302 0.54 -0.8 6,096,715 + Pf6N2E2_5302 0.54 -1.9 6,096,716 - Pf6N2E2_5302 0.54 +0.9 6,096,716 - Pf6N2E2_5302 0.54 -0.4 6,096,716 - Pf6N2E2_5302 0.54 +0.4 6,096,716 - Pf6N2E2_5302 0.54 +0.2 6,096,793 + Pf6N2E2_5302 0.69 -0.4 6,096,793 + Pf6N2E2_5302 0.69 +0.3 6,096,793 + Pf6N2E2_5302 0.69 -0.8 6,096,793 + Pf6N2E2_5302 0.69 -0.7 6,096,793 + Pf6N2E2_5302 0.69 +0.1 6,096,794 - Pf6N2E2_5302 0.70 -1.3 6,096,794 - Pf6N2E2_5302 0.70 +1.4 6,096,794 - Pf6N2E2_5302 0.70 -0.1 6,096,794 - Pf6N2E2_5302 0.70 -0.8 6,096,794 - Pf6N2E2_5302 0.70 +0.7 6,096,794 - Pf6N2E2_5302 0.70 -0.6 6,096,794 - Pf6N2E2_5302 0.70 -0.3 6,096,794 - Pf6N2E2_5302 0.70 -0.9 6,096,794 - Pf6N2E2_5302 0.70 +0.4 6,096,845 - Pf6N2E2_5302 0.80 -0.3 6,096,943 + -0.6 6,096,943 + -2.1 6,097,213 + Pf6N2E2_5303 0.85 -0.2 6,097,419 + +0.6 6,097,420 - +0.8 6,097,420 - -0.1 6,097,429 + -1.5 6,097,429 + +0.2 6,097,429 + +0.5 6,097,429 + -0.1 6,097,430 - +0.7 6,097,430 - -0.9 6,097,430 - +0.9 6,097,529 + -0.6 6,097,573 - -0.3 6,097,637 + +1.2 6,097,638 - -0.2 6,097,651 + +1.5 6,097,651 + -1.5 6,097,651 + -0.2 6,097,651 + -0.1 6,097,651 + -0.2 6,097,652 - -0.8 6,097,700 + -0.0 6,097,744 + +0.9 6,097,745 - -2.1 6,097,753 + -0.2 6,097,765 + +0.7 6,097,765 + -0.9 6,097,765 + +0.6 6,097,766 - -0.8 6,097,766 - -0.1 6,097,795 + -1.2 6,097,796 - -1.2 6,097,796 - -0.4 6,097,831 + Pf6N2E2_5304 0.16 -1.1 6,097,831 + Pf6N2E2_5304 0.16 -0.2 6,097,831 + Pf6N2E2_5304 0.16 -1.0 6,097,831 + Pf6N2E2_5304 0.16 -0.3 6,097,831 + Pf6N2E2_5304 0.16 +0.1 6,097,831 + Pf6N2E2_5304 0.16 +1.4 6,097,831 + Pf6N2E2_5304 0.16 -0.5 6,097,831 + Pf6N2E2_5304 0.16 -0.3 6,097,831 + Pf6N2E2_5304 0.16 +0.5 6,097,832 - Pf6N2E2_5304 0.16 +0.7 6,097,832 - Pf6N2E2_5304 0.16 +0.9 6,097,832 - Pf6N2E2_5304 0.16 +0.2 6,097,832 - Pf6N2E2_5304 0.16 -3.1 6,097,832 - Pf6N2E2_5304 0.16 -0.5 6,097,832 - Pf6N2E2_5304 0.16 +0.8 6,097,832 - Pf6N2E2_5304 0.16 +1.2 6,097,832 - Pf6N2E2_5304 0.16 +2.9 6,097,832 - Pf6N2E2_5304 0.16 -0.1 6,097,832 - Pf6N2E2_5304 0.16 +0.4 6,097,834 + Pf6N2E2_5304 0.17 -0.4 6,097,834 + Pf6N2E2_5304 0.17 -1.1 6,097,835 - Pf6N2E2_5304 0.17 -1.3 6,097,835 - Pf6N2E2_5304 0.17 -2.5 6,097,835 - Pf6N2E2_5304 0.17 -0.7
Or see this region's nucleotide sequence