Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3738 and Pf6N2E2_3739 overlap by 4 nucleotides Pf6N2E2_3739 and Pf6N2E2_3740 overlap by 4 nucleotides Pf6N2E2_3740 and Pf6N2E2_3741 overlap by 8 nucleotides Pf6N2E2_3741 and Pf6N2E2_3742 overlap by 8 nucleotides Pf6N2E2_3742 and Pf6N2E2_3743 are separated by 2 nucleotides
Pf6N2E2_3738 - General secretion pathway protein L, at 4,354,377 to 4,355,480
_3738
Pf6N2E2_3739 - General secretion pathway protein K, at 4,355,477 to 4,356,325
_3739
Pf6N2E2_3740 - General secretion pathway protein J, at 4,356,322 to 4,356,855
_3740
Pf6N2E2_3741 - General secretion pathway protein I, at 4,356,848 to 4,357,234
_3741
Pf6N2E2_3742 - General secretion pathway protein H, at 4,357,227 to 4,357,694
_3742
Pf6N2E2_3743 - General secretion pathway protein G, at 4,357,697 to 4,358,152
_3743
Position (kb)
4356
4357 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4355.464 kb on + strand at 4355.798 kb on - strand, within Pf6N2E2_3739 at 4355.933 kb on + strand, within Pf6N2E2_3739 at 4356.010 kb on + strand, within Pf6N2E2_3739 at 4356.010 kb on + strand, within Pf6N2E2_3739 at 4356.011 kb on - strand, within Pf6N2E2_3739 at 4356.110 kb on + strand, within Pf6N2E2_3739 at 4356.111 kb on - strand, within Pf6N2E2_3739 at 4356.128 kb on + strand, within Pf6N2E2_3739 at 4356.129 kb on - strand, within Pf6N2E2_3739 at 4356.143 kb on + strand, within Pf6N2E2_3739 at 4356.144 kb on - strand, within Pf6N2E2_3739 at 4356.144 kb on - strand, within Pf6N2E2_3739 at 4356.455 kb on - strand, within Pf6N2E2_3740 at 4356.455 kb on - strand, within Pf6N2E2_3740 at 4356.455 kb on - strand, within Pf6N2E2_3740 at 4356.475 kb on + strand, within Pf6N2E2_3740 at 4356.475 kb on + strand, within Pf6N2E2_3740 at 4356.475 kb on + strand, within Pf6N2E2_3740 at 4356.476 kb on - strand, within Pf6N2E2_3740 at 4356.476 kb on - strand, within Pf6N2E2_3740 at 4356.615 kb on + strand, within Pf6N2E2_3740 at 4356.616 kb on - strand, within Pf6N2E2_3740 at 4356.849 kb on + strand at 4356.849 kb on + strand at 4356.849 kb on + strand at 4356.850 kb on - strand at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.491 kb on + strand, within Pf6N2E2_3742 at 4357.497 kb on + strand, within Pf6N2E2_3742 at 4357.498 kb on - strand, within Pf6N2E2_3742 at 4357.498 kb on - strand, within Pf6N2E2_3742 at 4357.504 kb on + strand, within Pf6N2E2_3742 at 4357.767 kb on + strand, within Pf6N2E2_3743 at 4357.768 kb on - strand, within Pf6N2E2_3743 at 4357.768 kb on - strand, within Pf6N2E2_3743 at 4357.818 kb on + strand, within Pf6N2E2_3743
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 4,355,464 + -0.2 4,355,798 - Pf6N2E2_3739 0.38 +0.3 4,355,933 + Pf6N2E2_3739 0.54 +2.8 4,356,010 + Pf6N2E2_3739 0.63 +0.7 4,356,010 + Pf6N2E2_3739 0.63 +0.6 4,356,011 - Pf6N2E2_3739 0.63 -0.1 4,356,110 + Pf6N2E2_3739 0.75 -2.0 4,356,111 - Pf6N2E2_3739 0.75 -0.0 4,356,128 + Pf6N2E2_3739 0.77 -0.8 4,356,129 - Pf6N2E2_3739 0.77 +1.2 4,356,143 + Pf6N2E2_3739 0.78 -1.1 4,356,144 - Pf6N2E2_3739 0.79 -0.0 4,356,144 - Pf6N2E2_3739 0.79 +0.6 4,356,455 - Pf6N2E2_3740 0.25 +0.7 4,356,455 - Pf6N2E2_3740 0.25 -1.6 4,356,455 - Pf6N2E2_3740 0.25 -0.7 4,356,475 + Pf6N2E2_3740 0.29 -2.3 4,356,475 + Pf6N2E2_3740 0.29 -0.3 4,356,475 + Pf6N2E2_3740 0.29 -0.6 4,356,476 - Pf6N2E2_3740 0.29 +0.3 4,356,476 - Pf6N2E2_3740 0.29 -0.1 4,356,615 + Pf6N2E2_3740 0.55 -2.3 4,356,616 - Pf6N2E2_3740 0.55 -1.1 4,356,849 + -0.0 4,356,849 + +0.6 4,356,849 + -0.1 4,356,850 - -0.7 4,357,491 + Pf6N2E2_3742 0.56 +0.3 4,357,491 + Pf6N2E2_3742 0.56 -0.6 4,357,491 + Pf6N2E2_3742 0.56 +0.9 4,357,491 + Pf6N2E2_3742 0.56 +0.1 4,357,497 + Pf6N2E2_3742 0.58 -0.1 4,357,498 - Pf6N2E2_3742 0.58 -0.5 4,357,498 - Pf6N2E2_3742 0.58 +0.5 4,357,504 + Pf6N2E2_3742 0.59 +0.1 4,357,767 + Pf6N2E2_3743 0.15 +1.0 4,357,768 - Pf6N2E2_3743 0.16 +0.6 4,357,768 - Pf6N2E2_3743 0.16 +1.2 4,357,818 + Pf6N2E2_3743 0.27 +0.1
Or see this region's nucleotide sequence