Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2980

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2978 and Pf6N2E2_2979 are separated by 263 nucleotidesPf6N2E2_2979 and Pf6N2E2_2980 are separated by 152 nucleotidesPf6N2E2_2980 and Pf6N2E2_2981 are separated by 57 nucleotidesPf6N2E2_2981 and Pf6N2E2_2982 are separated by 205 nucleotides Pf6N2E2_2978 - Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase, at 3,473,781 to 3,475,121 _2978 Pf6N2E2_2979 - Histone acetyltransferase HPA2 and related acetyltransferases, at 3,475,385 to 3,475,858 _2979 Pf6N2E2_2980 - tRNA pseudouridine synthase A (EC 4.2.1.70), at 3,476,011 to 3,476,652 _2980 Pf6N2E2_2981 - FIG00956655: hypothetical protein, at 3,476,710 to 3,477,171 _2981 Pf6N2E2_2982 - COG1720: Uncharacterized conserved protein, at 3,477,377 to 3,478,075 _2982 Position (kb) 3476 3477Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3475.344 kb on - strandat 3475.461 kb on + strand, within Pf6N2E2_2979at 3475.493 kb on + strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.494 kb on - strand, within Pf6N2E2_2979at 3475.529 kb on + strand, within Pf6N2E2_2979at 3475.674 kb on - strand, within Pf6N2E2_2979at 3475.674 kb on - strand, within Pf6N2E2_2979at 3475.674 kb on - strand, within Pf6N2E2_2979at 3475.742 kb on + strand, within Pf6N2E2_2979at 3475.742 kb on + strand, within Pf6N2E2_2979at 3475.743 kb on - strand, within Pf6N2E2_2979at 3475.743 kb on - strand, within Pf6N2E2_2979at 3475.824 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3475.907 kb on - strandat 3476.168 kb on + strand, within Pf6N2E2_2980at 3476.168 kb on + strand, within Pf6N2E2_2980at 3476.168 kb on + strand, within Pf6N2E2_2980at 3476.168 kb on + strand, within Pf6N2E2_2980at 3476.169 kb on - strand, within Pf6N2E2_2980at 3476.169 kb on - strand, within Pf6N2E2_2980at 3476.169 kb on - strand, within Pf6N2E2_2980at 3476.169 kb on - strand, within Pf6N2E2_2980at 3476.169 kb on - strand, within Pf6N2E2_2980at 3476.169 kb on - strand, within Pf6N2E2_2980at 3476.169 kb on - strand, within Pf6N2E2_2980at 3476.368 kb on + strand, within Pf6N2E2_2980at 3476.368 kb on + strand, within Pf6N2E2_2980at 3476.368 kb on + strand, within Pf6N2E2_2980at 3476.368 kb on + strand, within Pf6N2E2_2980at 3476.368 kb on + strand, within Pf6N2E2_2980at 3476.368 kb on + strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.369 kb on - strand, within Pf6N2E2_2980at 3476.434 kb on + strand, within Pf6N2E2_2980at 3476.434 kb on + strand, within Pf6N2E2_2980at 3476.434 kb on + strand, within Pf6N2E2_2980at 3476.435 kb on - strand, within Pf6N2E2_2980at 3476.435 kb on - strand, within Pf6N2E2_2980at 3476.435 kb on - strand, within Pf6N2E2_2980at 3476.435 kb on - strand, within Pf6N2E2_2980at 3476.435 kb on - strand, within Pf6N2E2_2980at 3476.435 kb on - strand, within Pf6N2E2_2980at 3476.435 kb on - strand, within Pf6N2E2_2980at 3476.626 kb on + strandat 3476.627 kb on - strandat 3476.651 kb on - strandat 3476.726 kb on + strandat 3476.726 kb on + strandat 3476.727 kb on - strandat 3476.743 kb on + strandat 3476.743 kb on + strandat 3476.743 kb on + strandat 3476.743 kb on + strandat 3476.743 kb on + strandat 3476.744 kb on - strandat 3476.744 kb on - strandat 3476.828 kb on - strand, within Pf6N2E2_2981at 3476.828 kb on - strand, within Pf6N2E2_2981at 3476.828 kb on - strand, within Pf6N2E2_2981at 3477.103 kb on + strand, within Pf6N2E2_2981at 3477.103 kb on + strand, within Pf6N2E2_2981at 3477.104 kb on - strand, within Pf6N2E2_2981at 3477.341 kb on + strandat 3477.383 kb on + strandat 3477.384 kb on - strandat 3477.384 kb on - strandat 3477.384 kb on - strandat 3477.384 kb on - strandat 3477.597 kb on + strand, within Pf6N2E2_2982at 3477.597 kb on + strand, within Pf6N2E2_2982at 3477.597 kb on + strand, within Pf6N2E2_2982at 3477.598 kb on - strand, within Pf6N2E2_2982at 3477.619 kb on + strand, within Pf6N2E2_2982at 3477.619 kb on + strand, within Pf6N2E2_2982

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,475,344 - -1.0
3,475,461 + Pf6N2E2_2979 0.16 +0.2
3,475,493 + Pf6N2E2_2979 0.23 -0.5
3,475,494 - Pf6N2E2_2979 0.23 -0.9
3,475,494 - Pf6N2E2_2979 0.23 +0.2
3,475,494 - Pf6N2E2_2979 0.23 +0.2
3,475,494 - Pf6N2E2_2979 0.23 -0.7
3,475,494 - Pf6N2E2_2979 0.23 -0.4
3,475,494 - Pf6N2E2_2979 0.23 -1.7
3,475,494 - Pf6N2E2_2979 0.23 +0.1
3,475,529 + Pf6N2E2_2979 0.30 -0.3
3,475,674 - Pf6N2E2_2979 0.61 -1.5
3,475,674 - Pf6N2E2_2979 0.61 +0.3
3,475,674 - Pf6N2E2_2979 0.61 -0.5
3,475,742 + Pf6N2E2_2979 0.75 -0.7
3,475,742 + Pf6N2E2_2979 0.75 +0.4
3,475,743 - Pf6N2E2_2979 0.76 +0.8
3,475,743 - Pf6N2E2_2979 0.76 -0.7
3,475,824 - +1.7
3,475,907 - +0.2
3,475,907 - +0.2
3,475,907 - -0.5
3,475,907 - -0.4
3,475,907 - +0.4
3,475,907 - +0.5
3,476,168 + Pf6N2E2_2980 0.24 +0.3
3,476,168 + Pf6N2E2_2980 0.24 +0.4
3,476,168 + Pf6N2E2_2980 0.24 +0.8
3,476,168 + Pf6N2E2_2980 0.24 +2.9
3,476,169 - Pf6N2E2_2980 0.25 -1.0
3,476,169 - Pf6N2E2_2980 0.25 -0.1
3,476,169 - Pf6N2E2_2980 0.25 -0.5
3,476,169 - Pf6N2E2_2980 0.25 -1.2
3,476,169 - Pf6N2E2_2980 0.25 -2.6
3,476,169 - Pf6N2E2_2980 0.25 +0.5
3,476,169 - Pf6N2E2_2980 0.25 +0.2
3,476,368 + Pf6N2E2_2980 0.56 -0.1
3,476,368 + Pf6N2E2_2980 0.56 +0.0
3,476,368 + Pf6N2E2_2980 0.56 +0.1
3,476,368 + Pf6N2E2_2980 0.56 +1.6
3,476,368 + Pf6N2E2_2980 0.56 -1.1
3,476,368 + Pf6N2E2_2980 0.56 +0.8
3,476,369 - Pf6N2E2_2980 0.56 +1.1
3,476,369 - Pf6N2E2_2980 0.56 -1.1
3,476,369 - Pf6N2E2_2980 0.56 -1.1
3,476,369 - Pf6N2E2_2980 0.56 +1.2
3,476,369 - Pf6N2E2_2980 0.56 -0.1
3,476,369 - Pf6N2E2_2980 0.56 +0.7
3,476,369 - Pf6N2E2_2980 0.56 -0.9
3,476,369 - Pf6N2E2_2980 0.56 +0.4
3,476,369 - Pf6N2E2_2980 0.56 +0.6
3,476,369 - Pf6N2E2_2980 0.56 +2.6
3,476,434 + Pf6N2E2_2980 0.66 +1.7
3,476,434 + Pf6N2E2_2980 0.66 +0.3
3,476,434 + Pf6N2E2_2980 0.66 +0.8
3,476,435 - Pf6N2E2_2980 0.66 -2.4
3,476,435 - Pf6N2E2_2980 0.66 -2.2
3,476,435 - Pf6N2E2_2980 0.66 +0.8
3,476,435 - Pf6N2E2_2980 0.66 +0.9
3,476,435 - Pf6N2E2_2980 0.66 +0.4
3,476,435 - Pf6N2E2_2980 0.66 +0.3
3,476,435 - Pf6N2E2_2980 0.66 +0.5
3,476,626 + +0.4
3,476,627 - +0.7
3,476,651 - -0.3
3,476,726 + -0.1
3,476,726 + -0.2
3,476,727 - +0.4
3,476,743 + -1.4
3,476,743 + +0.2
3,476,743 + +0.0
3,476,743 + +0.9
3,476,743 + +0.3
3,476,744 - +0.4
3,476,744 - -0.4
3,476,828 - Pf6N2E2_2981 0.26 +0.1
3,476,828 - Pf6N2E2_2981 0.26 +0.0
3,476,828 - Pf6N2E2_2981 0.26 -1.8
3,477,103 + Pf6N2E2_2981 0.85 -0.8
3,477,103 + Pf6N2E2_2981 0.85 -0.6
3,477,104 - Pf6N2E2_2981 0.85 -0.5
3,477,341 + +0.5
3,477,383 + -0.7
3,477,384 - +0.0
3,477,384 - +0.8
3,477,384 - -1.1
3,477,384 - -0.1
3,477,597 + Pf6N2E2_2982 0.31 -1.8
3,477,597 + Pf6N2E2_2982 0.31 -0.0
3,477,597 + Pf6N2E2_2982 0.31 +0.9
3,477,598 - Pf6N2E2_2982 0.32 +0.4
3,477,619 + Pf6N2E2_2982 0.35 +0.4
3,477,619 + Pf6N2E2_2982 0.35 +0.2

Or see this region's nucleotide sequence