Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2795

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2792 and Pf6N2E2_2793 are separated by 120 nucleotidesPf6N2E2_2793 and Pf6N2E2_2794 are separated by 176 nucleotidesPf6N2E2_2794 and Pf6N2E2_2795 are separated by 96 nucleotidesPf6N2E2_2795 and Pf6N2E2_2796 are separated by 334 nucleotides Pf6N2E2_2792 - Antitoxin 1, at 3,280,798 to 3,281,214 _2792 Pf6N2E2_2793 - hypothetical protein, at 3,281,335 to 3,281,481 _2793 Pf6N2E2_2794 - putative membrane protein, at 3,281,658 to 3,282,062 _2794 Pf6N2E2_2795 - putative exported protein, at 3,282,159 to 3,282,653 _2795 Pf6N2E2_2796 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 3,282,988 to 3,284,337 _2796 Position (kb) 3282 3283Strain fitness (log2 ratio) -2 -1 0 1 2at 3281.486 kb on + strandat 3281.486 kb on + strandat 3281.591 kb on + strandat 3281.591 kb on + strandat 3281.591 kb on + strandat 3281.849 kb on + strand, within Pf6N2E2_2794at 3281.896 kb on + strand, within Pf6N2E2_2794at 3282.478 kb on + strand, within Pf6N2E2_2795at 3282.478 kb on + strand, within Pf6N2E2_2795at 3282.479 kb on - strand, within Pf6N2E2_2795at 3282.654 kb on - strandat 3282.699 kb on - strandat 3282.729 kb on + strandat 3282.729 kb on + strandat 3282.729 kb on + strandat 3282.729 kb on + strandat 3282.729 kb on + strandat 3282.729 kb on + strandat 3282.730 kb on - strandat 3282.730 kb on - strandat 3282.730 kb on - strandat 3282.730 kb on - strandat 3282.730 kb on - strandat 3282.765 kb on + strandat 3282.766 kb on - strandat 3282.766 kb on - strandat 3282.848 kb on + strandat 3282.849 kb on - strandat 3282.849 kb on - strandat 3282.852 kb on + strandat 3282.852 kb on + strandat 3282.853 kb on - strandat 3282.886 kb on - strandat 3282.918 kb on + strandat 3282.918 kb on + strandat 3282.918 kb on + strandat 3282.918 kb on + strandat 3282.918 kb on + strandat 3282.918 kb on + strandat 3282.918 kb on + strandat 3282.918 kb on + strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.919 kb on - strandat 3282.920 kb on + strandat 3282.921 kb on - strandat 3282.921 kb on - strandat 3283.028 kb on + strandat 3283.028 kb on + strandat 3283.028 kb on + strandat 3283.029 kb on - strandat 3283.029 kb on - strandat 3283.029 kb on - strandat 3283.029 kb on - strandat 3283.117 kb on + strandat 3283.118 kb on - strandat 3283.118 kb on - strandat 3283.239 kb on + strand, within Pf6N2E2_2796at 3283.239 kb on + strand, within Pf6N2E2_2796at 3283.239 kb on + strand, within Pf6N2E2_2796at 3283.240 kb on - strand, within Pf6N2E2_2796at 3283.267 kb on - strand, within Pf6N2E2_2796at 3283.297 kb on + strand, within Pf6N2E2_2796at 3283.297 kb on + strand, within Pf6N2E2_2796at 3283.298 kb on - strand, within Pf6N2E2_2796at 3283.298 kb on - strand, within Pf6N2E2_2796at 3283.298 kb on - strand, within Pf6N2E2_2796at 3283.298 kb on - strand, within Pf6N2E2_2796at 3283.298 kb on - strand, within Pf6N2E2_2796at 3283.298 kb on - strand, within Pf6N2E2_2796at 3283.325 kb on + strand, within Pf6N2E2_2796at 3283.325 kb on + strand, within Pf6N2E2_2796at 3283.325 kb on + strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.326 kb on - strand, within Pf6N2E2_2796at 3283.364 kb on + strand, within Pf6N2E2_2796at 3283.364 kb on + strand, within Pf6N2E2_2796at 3283.364 kb on + strand, within Pf6N2E2_2796at 3283.365 kb on - strand, within Pf6N2E2_2796at 3283.433 kb on - strand, within Pf6N2E2_2796at 3283.466 kb on + strand, within Pf6N2E2_2796at 3283.467 kb on - strand, within Pf6N2E2_2796at 3283.538 kb on + strand, within Pf6N2E2_2796at 3283.539 kb on - strand, within Pf6N2E2_2796at 3283.539 kb on - strand, within Pf6N2E2_2796at 3283.539 kb on - strand, within Pf6N2E2_2796at 3283.569 kb on - strand, within Pf6N2E2_2796

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,281,486 + +0.2
3,281,486 + -0.5
3,281,591 + -0.8
3,281,591 + +1.0
3,281,591 + -0.2
3,281,849 + Pf6N2E2_2794 0.47 -0.6
3,281,896 + Pf6N2E2_2794 0.59 -0.9
3,282,478 + Pf6N2E2_2795 0.64 -1.0
3,282,478 + Pf6N2E2_2795 0.64 +0.2
3,282,479 - Pf6N2E2_2795 0.65 -1.0
3,282,654 - -0.6
3,282,699 - -1.9
3,282,729 + -2.2
3,282,729 + -0.1
3,282,729 + -0.7
3,282,729 + -1.0
3,282,729 + -0.6
3,282,729 + -0.5
3,282,730 - -0.4
3,282,730 - -1.0
3,282,730 - -1.4
3,282,730 - +0.1
3,282,730 - +0.4
3,282,765 + -0.5
3,282,766 - -0.0
3,282,766 - +1.2
3,282,848 + +0.5
3,282,849 - -1.6
3,282,849 - +0.5
3,282,852 + -0.1
3,282,852 + +0.1
3,282,853 - +1.0
3,282,886 - -1.5
3,282,918 + +0.3
3,282,918 + +0.6
3,282,918 + +0.2
3,282,918 + +0.0
3,282,918 + +0.7
3,282,918 + -0.4
3,282,918 + +0.3
3,282,918 + -1.0
3,282,919 - +0.8
3,282,919 - +2.2
3,282,919 - +1.2
3,282,919 - +2.4
3,282,919 - -0.1
3,282,919 - -1.2
3,282,919 - -0.9
3,282,919 - -0.7
3,282,919 - +0.6
3,282,919 - +0.8
3,282,919 - -0.2
3,282,919 - +0.1
3,282,920 + +0.8
3,282,921 - +0.2
3,282,921 - +0.4
3,283,028 + +2.1
3,283,028 + +0.5
3,283,028 + -0.8
3,283,029 - +0.1
3,283,029 - +1.1
3,283,029 - -1.6
3,283,029 - -0.2
3,283,117 + -0.9
3,283,118 - -0.2
3,283,118 - -0.7
3,283,239 + Pf6N2E2_2796 0.19 +0.4
3,283,239 + Pf6N2E2_2796 0.19 -0.2
3,283,239 + Pf6N2E2_2796 0.19 +0.1
3,283,240 - Pf6N2E2_2796 0.19 -1.0
3,283,267 - Pf6N2E2_2796 0.21 +0.0
3,283,297 + Pf6N2E2_2796 0.23 +1.8
3,283,297 + Pf6N2E2_2796 0.23 -0.5
3,283,298 - Pf6N2E2_2796 0.23 +0.6
3,283,298 - Pf6N2E2_2796 0.23 +0.2
3,283,298 - Pf6N2E2_2796 0.23 +0.2
3,283,298 - Pf6N2E2_2796 0.23 +0.3
3,283,298 - Pf6N2E2_2796 0.23 +1.2
3,283,298 - Pf6N2E2_2796 0.23 +0.2
3,283,325 + Pf6N2E2_2796 0.25 -0.4
3,283,325 + Pf6N2E2_2796 0.25 +0.4
3,283,325 + Pf6N2E2_2796 0.25 +0.3
3,283,326 - Pf6N2E2_2796 0.25 +0.1
3,283,326 - Pf6N2E2_2796 0.25 +0.2
3,283,326 - Pf6N2E2_2796 0.25 +1.1
3,283,326 - Pf6N2E2_2796 0.25 +1.4
3,283,326 - Pf6N2E2_2796 0.25 +0.5
3,283,326 - Pf6N2E2_2796 0.25 +1.1
3,283,326 - Pf6N2E2_2796 0.25 -1.9
3,283,326 - Pf6N2E2_2796 0.25 -1.1
3,283,364 + Pf6N2E2_2796 0.28 +1.2
3,283,364 + Pf6N2E2_2796 0.28 +0.5
3,283,364 + Pf6N2E2_2796 0.28 +0.4
3,283,365 - Pf6N2E2_2796 0.28 -0.5
3,283,433 - Pf6N2E2_2796 0.33 +0.0
3,283,466 + Pf6N2E2_2796 0.35 +0.3
3,283,467 - Pf6N2E2_2796 0.35 -0.5
3,283,538 + Pf6N2E2_2796 0.41 -1.2
3,283,539 - Pf6N2E2_2796 0.41 -1.0
3,283,539 - Pf6N2E2_2796 0.41 +0.3
3,283,539 - Pf6N2E2_2796 0.41 +1.2
3,283,569 - Pf6N2E2_2796 0.43 +0.5

Or see this region's nucleotide sequence