Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2724

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2722 and Pf6N2E2_2723 are separated by 52 nucleotidesPf6N2E2_2723 and Pf6N2E2_2724 are separated by 160 nucleotidesPf6N2E2_2724 and Pf6N2E2_2725 are separated by 234 nucleotides Pf6N2E2_2722 - FIG00954807: hypothetical protein, at 3,214,077 to 3,215,285 _2722 Pf6N2E2_2723 - YcgN (Fragment), at 3,215,338 to 3,215,787 _2723 Pf6N2E2_2724 - Nitroreductase family protein, at 3,215,948 to 3,216,541 _2724 Pf6N2E2_2725 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 3,216,776 to 3,217,708 _2725 Position (kb) 3215 3216 3217Strain fitness (log2 ratio) -2 -1 0 1 2at 3215.403 kb on + strand, within Pf6N2E2_2723at 3215.403 kb on + strand, within Pf6N2E2_2723at 3215.403 kb on + strand, within Pf6N2E2_2723at 3215.403 kb on + strand, within Pf6N2E2_2723at 3215.404 kb on - strand, within Pf6N2E2_2723at 3215.404 kb on - strand, within Pf6N2E2_2723at 3215.649 kb on - strand, within Pf6N2E2_2723at 3215.649 kb on - strand, within Pf6N2E2_2723at 3215.649 kb on - strand, within Pf6N2E2_2723at 3215.649 kb on - strand, within Pf6N2E2_2723at 3215.830 kb on - strandat 3215.830 kb on - strandat 3215.905 kb on + strandat 3215.905 kb on + strandat 3215.905 kb on + strandat 3215.906 kb on - strandat 3215.906 kb on - strandat 3215.906 kb on - strandat 3215.906 kb on - strandat 3215.906 kb on - strandat 3215.941 kb on + strandat 3215.941 kb on + strandat 3215.942 kb on - strandat 3216.092 kb on + strand, within Pf6N2E2_2724at 3216.119 kb on + strand, within Pf6N2E2_2724at 3216.119 kb on + strand, within Pf6N2E2_2724at 3216.404 kb on + strand, within Pf6N2E2_2724at 3216.405 kb on - strand, within Pf6N2E2_2724at 3216.464 kb on + strand, within Pf6N2E2_2724at 3216.464 kb on + strand, within Pf6N2E2_2724at 3216.540 kb on - strandat 3216.566 kb on + strandat 3216.566 kb on + strandat 3216.566 kb on + strandat 3216.567 kb on - strandat 3216.567 kb on - strandat 3216.567 kb on - strandat 3216.567 kb on - strandat 3216.574 kb on + strandat 3216.574 kb on + strandat 3216.574 kb on + strandat 3216.574 kb on + strandat 3216.575 kb on - strandat 3216.575 kb on - strandat 3216.671 kb on + strandat 3216.671 kb on + strandat 3216.672 kb on - strandat 3216.743 kb on - strandat 3216.743 kb on - strandat 3216.743 kb on - strandat 3216.743 kb on - strandat 3216.743 kb on - strandat 3217.092 kb on + strand, within Pf6N2E2_2725at 3217.092 kb on + strand, within Pf6N2E2_2725at 3217.092 kb on + strand, within Pf6N2E2_2725at 3217.092 kb on + strand, within Pf6N2E2_2725at 3217.092 kb on + strand, within Pf6N2E2_2725at 3217.093 kb on - strand, within Pf6N2E2_2725at 3217.137 kb on + strand, within Pf6N2E2_2725at 3217.137 kb on + strand, within Pf6N2E2_2725at 3217.138 kb on - strand, within Pf6N2E2_2725at 3217.138 kb on - strand, within Pf6N2E2_2725at 3217.138 kb on - strand, within Pf6N2E2_2725at 3217.228 kb on - strand, within Pf6N2E2_2725at 3217.228 kb on - strand, within Pf6N2E2_2725at 3217.228 kb on - strand, within Pf6N2E2_2725at 3217.228 kb on - strand, within Pf6N2E2_2725at 3217.373 kb on + strand, within Pf6N2E2_2725at 3217.374 kb on - strand, within Pf6N2E2_2725at 3217.374 kb on - strand, within Pf6N2E2_2725at 3217.398 kb on + strand, within Pf6N2E2_2725at 3217.398 kb on + strand, within Pf6N2E2_2725at 3217.398 kb on + strand, within Pf6N2E2_2725at 3217.398 kb on + strand, within Pf6N2E2_2725at 3217.398 kb on + strand, within Pf6N2E2_2725at 3217.398 kb on + strand, within Pf6N2E2_2725at 3217.398 kb on + strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.399 kb on - strand, within Pf6N2E2_2725at 3217.410 kb on + strand, within Pf6N2E2_2725at 3217.411 kb on - strand, within Pf6N2E2_2725at 3217.411 kb on - strand, within Pf6N2E2_2725at 3217.411 kb on - strand, within Pf6N2E2_2725at 3217.459 kb on - strand, within Pf6N2E2_2725at 3217.528 kb on + strand, within Pf6N2E2_2725at 3217.528 kb on + strand, within Pf6N2E2_2725at 3217.528 kb on + strand, within Pf6N2E2_2725at 3217.528 kb on + strand, within Pf6N2E2_2725at 3217.528 kb on + strand, within Pf6N2E2_2725

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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3,215,403 + Pf6N2E2_2723 0.14 +1.0
3,215,403 + Pf6N2E2_2723 0.14 +0.9
3,215,403 + Pf6N2E2_2723 0.14 -0.3
3,215,403 + Pf6N2E2_2723 0.14 +0.7
3,215,404 - Pf6N2E2_2723 0.15 -0.5
3,215,404 - Pf6N2E2_2723 0.15 -0.5
3,215,649 - Pf6N2E2_2723 0.69 -0.5
3,215,649 - Pf6N2E2_2723 0.69 +1.6
3,215,649 - Pf6N2E2_2723 0.69 +0.2
3,215,649 - Pf6N2E2_2723 0.69 -0.2
3,215,830 - -0.6
3,215,830 - -0.6
3,215,905 + +1.0
3,215,905 + +0.9
3,215,905 + +1.3
3,215,906 - +0.0
3,215,906 - +0.8
3,215,906 - +0.4
3,215,906 - +1.0
3,215,906 - +0.7
3,215,941 + +1.0
3,215,941 + -0.0
3,215,942 - +0.8
3,216,092 + Pf6N2E2_2724 0.24 -0.1
3,216,119 + Pf6N2E2_2724 0.29 -1.1
3,216,119 + Pf6N2E2_2724 0.29 +1.0
3,216,404 + Pf6N2E2_2724 0.77 -0.6
3,216,405 - Pf6N2E2_2724 0.77 -1.9
3,216,464 + Pf6N2E2_2724 0.87 -1.5
3,216,464 + Pf6N2E2_2724 0.87 -1.9
3,216,540 - +0.3
3,216,566 + +0.7
3,216,566 + -0.8
3,216,566 + -0.5
3,216,567 - +0.6
3,216,567 - +0.8
3,216,567 - +0.4
3,216,567 - -0.0
3,216,574 + +0.9
3,216,574 + -1.5
3,216,574 + +1.0
3,216,574 + -1.0
3,216,575 - -0.4
3,216,575 - -1.1
3,216,671 + +0.5
3,216,671 + -0.2
3,216,672 - -0.7
3,216,743 - +0.8
3,216,743 - +0.1
3,216,743 - +0.1
3,216,743 - -0.7
3,216,743 - -2.1
3,217,092 + Pf6N2E2_2725 0.34 +0.8
3,217,092 + Pf6N2E2_2725 0.34 +0.5
3,217,092 + Pf6N2E2_2725 0.34 -0.5
3,217,092 + Pf6N2E2_2725 0.34 +0.5
3,217,092 + Pf6N2E2_2725 0.34 +1.3
3,217,093 - Pf6N2E2_2725 0.34 -0.2
3,217,137 + Pf6N2E2_2725 0.39 +1.2
3,217,137 + Pf6N2E2_2725 0.39 -1.2
3,217,138 - Pf6N2E2_2725 0.39 -0.1
3,217,138 - Pf6N2E2_2725 0.39 -1.8
3,217,138 - Pf6N2E2_2725 0.39 +0.7
3,217,228 - Pf6N2E2_2725 0.48 -0.5
3,217,228 - Pf6N2E2_2725 0.48 -1.9
3,217,228 - Pf6N2E2_2725 0.48 +0.2
3,217,228 - Pf6N2E2_2725 0.48 -0.0
3,217,373 + Pf6N2E2_2725 0.64 -0.1
3,217,374 - Pf6N2E2_2725 0.64 -0.5
3,217,374 - Pf6N2E2_2725 0.64 +0.7
3,217,398 + Pf6N2E2_2725 0.67 -1.4
3,217,398 + Pf6N2E2_2725 0.67 -0.7
3,217,398 + Pf6N2E2_2725 0.67 -0.3
3,217,398 + Pf6N2E2_2725 0.67 -0.8
3,217,398 + Pf6N2E2_2725 0.67 +0.3
3,217,398 + Pf6N2E2_2725 0.67 -1.3
3,217,398 + Pf6N2E2_2725 0.67 +1.8
3,217,399 - Pf6N2E2_2725 0.67 +0.2
3,217,399 - Pf6N2E2_2725 0.67 -0.0
3,217,399 - Pf6N2E2_2725 0.67 -1.2
3,217,399 - Pf6N2E2_2725 0.67 -1.1
3,217,399 - Pf6N2E2_2725 0.67 +1.6
3,217,399 - Pf6N2E2_2725 0.67 -0.2
3,217,399 - Pf6N2E2_2725 0.67 +2.4
3,217,399 - Pf6N2E2_2725 0.67 -0.5
3,217,399 - Pf6N2E2_2725 0.67 +1.8
3,217,399 - Pf6N2E2_2725 0.67 +1.3
3,217,399 - Pf6N2E2_2725 0.67 -1.2
3,217,410 + Pf6N2E2_2725 0.68 -0.1
3,217,411 - Pf6N2E2_2725 0.68 -0.1
3,217,411 - Pf6N2E2_2725 0.68 -0.9
3,217,411 - Pf6N2E2_2725 0.68 +1.2
3,217,459 - Pf6N2E2_2725 0.73 +1.3
3,217,528 + Pf6N2E2_2725 0.81 -0.5
3,217,528 + Pf6N2E2_2725 0.81 +1.4
3,217,528 + Pf6N2E2_2725 0.81 +0.4
3,217,528 + Pf6N2E2_2725 0.81 -0.4
3,217,528 + Pf6N2E2_2725 0.81 -0.4

Or see this region's nucleotide sequence