Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_246

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_244 and Pf6N2E2_245 are separated by 37 nucleotidesPf6N2E2_245 and Pf6N2E2_246 are separated by 36 nucleotidesPf6N2E2_246 and Pf6N2E2_247 are separated by 293 nucleotides Pf6N2E2_244 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 304,194 to 305,522 _244 Pf6N2E2_245 - ABC-type phosphate/phosphonate transport system, periplasmic component, at 305,560 to 306,342 _245 Pf6N2E2_246 - Methyl-accepting chemotaxis protein, at 306,379 to 308,322 _246 Pf6N2E2_247 - Transcriptional regulator, AraC family, at 308,616 to 309,659 _247 Position (kb) 306 307 308 309Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 305.406 kb on - strandat 305.457 kb on + strandat 305.457 kb on + strandat 305.457 kb on + strandat 305.573 kb on + strandat 305.573 kb on + strandat 305.574 kb on - strandat 305.574 kb on - strandat 305.582 kb on - strandat 305.582 kb on - strandat 305.582 kb on - strandat 305.603 kb on + strandat 305.785 kb on + strand, within Pf6N2E2_245at 305.785 kb on + strand, within Pf6N2E2_245at 305.785 kb on + strand, within Pf6N2E2_245at 305.786 kb on - strand, within Pf6N2E2_245at 305.835 kb on + strand, within Pf6N2E2_245at 305.835 kb on + strand, within Pf6N2E2_245at 305.835 kb on + strand, within Pf6N2E2_245at 305.836 kb on - strand, within Pf6N2E2_245at 305.836 kb on - strand, within Pf6N2E2_245at 305.836 kb on - strand, within Pf6N2E2_245at 306.058 kb on + strand, within Pf6N2E2_245at 306.058 kb on + strand, within Pf6N2E2_245at 306.064 kb on + strand, within Pf6N2E2_245at 306.064 kb on + strand, within Pf6N2E2_245at 306.142 kb on + strand, within Pf6N2E2_245at 306.142 kb on + strand, within Pf6N2E2_245at 306.143 kb on - strand, within Pf6N2E2_245at 306.143 kb on - strand, within Pf6N2E2_245at 306.146 kb on + strand, within Pf6N2E2_245at 306.146 kb on + strand, within Pf6N2E2_245at 306.146 kb on + strand, within Pf6N2E2_245at 306.146 kb on + strand, within Pf6N2E2_245at 306.147 kb on - strand, within Pf6N2E2_245at 306.147 kb on - strand, within Pf6N2E2_245at 306.159 kb on + strand, within Pf6N2E2_245at 306.183 kb on + strand, within Pf6N2E2_245at 306.277 kb on + strandat 306.277 kb on + strandat 306.295 kb on + strandat 306.295 kb on + strandat 306.295 kb on + strandat 306.332 kb on + strandat 306.332 kb on + strandat 306.332 kb on + strandat 306.333 kb on - strandat 306.333 kb on - strandat 306.381 kb on - strandat 306.564 kb on + strandat 307.289 kb on - strand, within Pf6N2E2_246at 307.289 kb on - strand, within Pf6N2E2_246at 307.417 kb on + strand, within Pf6N2E2_246at 307.538 kb on + strand, within Pf6N2E2_246at 307.538 kb on + strand, within Pf6N2E2_246at 307.538 kb on + strand, within Pf6N2E2_246at 307.598 kb on + strand, within Pf6N2E2_246at 307.598 kb on + strand, within Pf6N2E2_246at 307.598 kb on + strand, within Pf6N2E2_246at 307.598 kb on + strand, within Pf6N2E2_246at 307.599 kb on - strand, within Pf6N2E2_246at 307.801 kb on + strand, within Pf6N2E2_246at 307.801 kb on + strand, within Pf6N2E2_246at 307.802 kb on - strand, within Pf6N2E2_246at 307.819 kb on + strand, within Pf6N2E2_246at 307.819 kb on + strand, within Pf6N2E2_246at 307.839 kb on - strand, within Pf6N2E2_246at 307.839 kb on - strand, within Pf6N2E2_246at 307.839 kb on - strand, within Pf6N2E2_246at 307.839 kb on - strand, within Pf6N2E2_246at 307.841 kb on + strand, within Pf6N2E2_246at 307.841 kb on + strand, within Pf6N2E2_246at 307.842 kb on - strand, within Pf6N2E2_246at 307.855 kb on + strand, within Pf6N2E2_246at 307.889 kb on + strand, within Pf6N2E2_246at 307.900 kb on + strand, within Pf6N2E2_246at 307.900 kb on + strand, within Pf6N2E2_246at 307.901 kb on - strand, within Pf6N2E2_246at 307.913 kb on + strand, within Pf6N2E2_246at 307.914 kb on - strand, within Pf6N2E2_246at 307.979 kb on + strand, within Pf6N2E2_246at 308.020 kb on - strand, within Pf6N2E2_246at 308.317 kb on - strandat 308.344 kb on + strandat 308.345 kb on - strandat 308.414 kb on + strandat 308.415 kb on - strandat 308.415 kb on - strandat 308.426 kb on - strandat 308.426 kb on - strandat 308.514 kb on + strandat 308.514 kb on + strandat 308.514 kb on + strandat 308.527 kb on - strandat 308.601 kb on + strandat 308.601 kb on + strandat 308.601 kb on + strandat 308.601 kb on + strandat 308.601 kb on + strandat 308.602 kb on - strandat 308.605 kb on - strandat 308.615 kb on + strandat 308.616 kb on - strandat 308.616 kb on - strandat 308.638 kb on + strandat 308.662 kb on - strandat 308.716 kb on + strandat 308.717 kb on - strandat 308.717 kb on - strandat 308.717 kb on - strandat 308.717 kb on - strandat 308.726 kb on + strand, within Pf6N2E2_247at 308.802 kb on + strand, within Pf6N2E2_247at 308.802 kb on + strand, within Pf6N2E2_247at 308.803 kb on - strand, within Pf6N2E2_247at 309.135 kb on + strand, within Pf6N2E2_247at 309.135 kb on + strand, within Pf6N2E2_247at 309.136 kb on - strand, within Pf6N2E2_247at 309.136 kb on - strand, within Pf6N2E2_247

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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305,406 - +0.1
305,457 + -0.0
305,457 + +0.7
305,457 + -0.3
305,573 + -1.4
305,573 + +1.5
305,574 - +1.7
305,574 - -0.5
305,582 - +0.1
305,582 - +1.2
305,582 - -0.1
305,603 + +0.2
305,785 + Pf6N2E2_245 0.29 +0.3
305,785 + Pf6N2E2_245 0.29 -1.0
305,785 + Pf6N2E2_245 0.29 +0.2
305,786 - Pf6N2E2_245 0.29 +0.2
305,835 + Pf6N2E2_245 0.35 +0.8
305,835 + Pf6N2E2_245 0.35 -1.4
305,835 + Pf6N2E2_245 0.35 +0.9
305,836 - Pf6N2E2_245 0.35 -0.2
305,836 - Pf6N2E2_245 0.35 +1.5
305,836 - Pf6N2E2_245 0.35 +0.8
306,058 + Pf6N2E2_245 0.64 +0.3
306,058 + Pf6N2E2_245 0.64 +0.1
306,064 + Pf6N2E2_245 0.64 -1.8
306,064 + Pf6N2E2_245 0.64 +0.3
306,142 + Pf6N2E2_245 0.74 +1.2
306,142 + Pf6N2E2_245 0.74 +0.4
306,143 - Pf6N2E2_245 0.74 +1.5
306,143 - Pf6N2E2_245 0.74 -0.5
306,146 + Pf6N2E2_245 0.75 +0.4
306,146 + Pf6N2E2_245 0.75 +0.3
306,146 + Pf6N2E2_245 0.75 -0.8
306,146 + Pf6N2E2_245 0.75 +1.0
306,147 - Pf6N2E2_245 0.75 -0.0
306,147 - Pf6N2E2_245 0.75 -0.7
306,159 + Pf6N2E2_245 0.77 -0.1
306,183 + Pf6N2E2_245 0.80 -0.2
306,277 + -0.7
306,277 + -1.6
306,295 + +0.4
306,295 + +0.1
306,295 + +0.6
306,332 + +0.6
306,332 + +1.5
306,332 + +0.3
306,333 - +1.5
306,333 - -0.6
306,381 - +0.6
306,564 + +0.8
307,289 - Pf6N2E2_246 0.47 -0.0
307,289 - Pf6N2E2_246 0.47 -0.5
307,417 + Pf6N2E2_246 0.53 -1.4
307,538 + Pf6N2E2_246 0.60 +0.0
307,538 + Pf6N2E2_246 0.60 +0.3
307,538 + Pf6N2E2_246 0.60 +1.5
307,598 + Pf6N2E2_246 0.63 +0.3
307,598 + Pf6N2E2_246 0.63 +0.8
307,598 + Pf6N2E2_246 0.63 +0.5
307,598 + Pf6N2E2_246 0.63 -1.3
307,599 - Pf6N2E2_246 0.63 -2.4
307,801 + Pf6N2E2_246 0.73 -1.0
307,801 + Pf6N2E2_246 0.73 +0.7
307,802 - Pf6N2E2_246 0.73 -0.5
307,819 + Pf6N2E2_246 0.74 +0.5
307,819 + Pf6N2E2_246 0.74 -1.0
307,839 - Pf6N2E2_246 0.75 -0.1
307,839 - Pf6N2E2_246 0.75 +0.1
307,839 - Pf6N2E2_246 0.75 -1.4
307,839 - Pf6N2E2_246 0.75 -0.3
307,841 + Pf6N2E2_246 0.75 +0.5
307,841 + Pf6N2E2_246 0.75 +0.6
307,842 - Pf6N2E2_246 0.75 +1.4
307,855 + Pf6N2E2_246 0.76 -1.2
307,889 + Pf6N2E2_246 0.78 -0.3
307,900 + Pf6N2E2_246 0.78 +2.0
307,900 + Pf6N2E2_246 0.78 -1.7
307,901 - Pf6N2E2_246 0.78 -1.3
307,913 + Pf6N2E2_246 0.79 -0.8
307,914 - Pf6N2E2_246 0.79 -0.5
307,979 + Pf6N2E2_246 0.82 +0.5
308,020 - Pf6N2E2_246 0.84 -1.3
308,317 - -1.0
308,344 + -0.5
308,345 - +0.2
308,414 + -0.0
308,415 - +2.9
308,415 - +1.5
308,426 - +1.5
308,426 - -2.0
308,514 + +0.2
308,514 + +0.7
308,514 + +1.1
308,527 - -0.7
308,601 + +0.1
308,601 + +0.1
308,601 + -0.3
308,601 + +1.4
308,601 + -1.9
308,602 - -1.3
308,605 - -0.8
308,615 + +0.5
308,616 - -0.3
308,616 - +1.0
308,638 + -0.8
308,662 - -1.5
308,716 + +1.1
308,717 - +1.1
308,717 - +0.2
308,717 - -0.4
308,717 - -0.5
308,726 + Pf6N2E2_247 0.11 +1.1
308,802 + Pf6N2E2_247 0.18 +1.3
308,802 + Pf6N2E2_247 0.18 -3.4
308,803 - Pf6N2E2_247 0.18 +1.3
309,135 + Pf6N2E2_247 0.50 +0.0
309,135 + Pf6N2E2_247 0.50 -0.9
309,136 - Pf6N2E2_247 0.50 -1.5
309,136 - Pf6N2E2_247 0.50 +0.7

Or see this region's nucleotide sequence