Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2180

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2179 and Pf6N2E2_2180 are separated by 110 nucleotidesPf6N2E2_2180 and Pf6N2E2_2181 are separated by 61 nucleotides Pf6N2E2_2179 - Putrescine importer, at 2,583,681 to 2,585,030 _2179 Pf6N2E2_2180 - Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109), at 2,585,141 to 2,586,157 _2180 Pf6N2E2_2181 - Arginine N-succinyltransferase (EC 2.3.1.109), at 2,586,219 to 2,587,253 _2181 Position (kb) 2585 2586 2587Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2584.192 kb on - strand, within Pf6N2E2_2179at 2584.192 kb on - strand, within Pf6N2E2_2179at 2584.251 kb on + strand, within Pf6N2E2_2179at 2584.683 kb on + strand, within Pf6N2E2_2179at 2584.683 kb on + strand, within Pf6N2E2_2179at 2584.684 kb on - strand, within Pf6N2E2_2179at 2584.696 kb on - strand, within Pf6N2E2_2179at 2584.696 kb on - strand, within Pf6N2E2_2179at 2584.728 kb on + strand, within Pf6N2E2_2179at 2584.729 kb on - strand, within Pf6N2E2_2179at 2584.824 kb on + strand, within Pf6N2E2_2179at 2584.824 kb on + strand, within Pf6N2E2_2179at 2584.908 kb on + strandat 2584.908 kb on + strandat 2584.908 kb on + strandat 2584.908 kb on + strandat 2584.908 kb on + strandat 2584.908 kb on + strandat 2584.908 kb on + strandat 2584.908 kb on + strandat 2584.909 kb on - strandat 2584.968 kb on + strandat 2584.968 kb on + strandat 2584.968 kb on + strandat 2585.065 kb on + strandat 2585.065 kb on + strandat 2585.065 kb on + strandat 2585.065 kb on + strandat 2585.065 kb on + strandat 2585.066 kb on - strandat 2585.151 kb on + strandat 2585.167 kb on - strandat 2585.167 kb on - strandat 2585.388 kb on - strand, within Pf6N2E2_2180at 2585.402 kb on + strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.781 kb on - strand, within Pf6N2E2_2180at 2585.888 kb on + strand, within Pf6N2E2_2180at 2585.888 kb on + strandat 2585.889 kb on - strand, within Pf6N2E2_2180at 2585.889 kb on - strand, within Pf6N2E2_2180at 2585.896 kb on + strandat 2586.038 kb on + strand, within Pf6N2E2_2180at 2586.153 kb on + strandat 2586.201 kb on + strandat 2586.201 kb on + strandat 2586.201 kb on + strandat 2586.201 kb on + strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.202 kb on - strandat 2586.472 kb on - strandat 2586.472 kb on - strand, within Pf6N2E2_2181at 2586.477 kb on + strand, within Pf6N2E2_2181at 2586.850 kb on - strand, within Pf6N2E2_2181

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,584,192 - Pf6N2E2_2179 0.38 +0.6
2,584,192 - Pf6N2E2_2179 0.38 -0.9
2,584,251 + Pf6N2E2_2179 0.42 +0.2
2,584,683 + Pf6N2E2_2179 0.74 +0.4
2,584,683 + Pf6N2E2_2179 0.74 +0.4
2,584,684 - Pf6N2E2_2179 0.74 +0.4
2,584,696 - Pf6N2E2_2179 0.75 +3.6
2,584,696 - Pf6N2E2_2179 0.75 +0.6
2,584,728 + Pf6N2E2_2179 0.78 -0.4
2,584,729 - Pf6N2E2_2179 0.78 +3.4
2,584,824 + Pf6N2E2_2179 0.85 -0.3
2,584,824 + Pf6N2E2_2179 0.85 +1.0
2,584,908 + +0.4
2,584,908 + +0.7
2,584,908 + +1.6
2,584,908 + +0.9
2,584,908 + +0.0
2,584,908 + +1.0
2,584,908 + +1.3
2,584,908 + +0.2
2,584,909 - -1.2
2,584,968 + +0.5
2,584,968 + +1.2
2,584,968 + +0.7
2,585,065 + +0.1
2,585,065 + +0.2
2,585,065 + +0.2
2,585,065 + +1.5
2,585,065 + +1.5
2,585,066 - +0.9
2,585,151 + -1.2
2,585,167 - +0.6
2,585,167 - -0.0
2,585,388 - Pf6N2E2_2180 0.24 +1.9
2,585,402 + Pf6N2E2_2180 0.26 +0.8
2,585,781 - Pf6N2E2_2180 0.63 -0.4
2,585,781 - Pf6N2E2_2180 0.63 +0.6
2,585,781 - Pf6N2E2_2180 0.63 -2.5
2,585,781 - Pf6N2E2_2180 0.63 -0.0
2,585,888 + Pf6N2E2_2180 0.73 -1.4
2,585,888 + -0.4
2,585,889 - Pf6N2E2_2180 0.74 -1.9
2,585,889 - Pf6N2E2_2180 0.74 +0.2
2,585,896 + +0.6
2,586,038 + Pf6N2E2_2180 0.88 -1.2
2,586,153 + +0.9
2,586,201 + -0.7
2,586,201 + -0.4
2,586,201 + +0.6
2,586,201 + +0.4
2,586,202 - +0.4
2,586,202 - +0.2
2,586,202 - -0.7
2,586,202 - -0.3
2,586,202 - -0.4
2,586,202 - +1.6
2,586,472 - +0.8
2,586,472 - Pf6N2E2_2181 0.24 -1.4
2,586,477 + Pf6N2E2_2181 0.25 -1.4
2,586,850 - Pf6N2E2_2181 0.61 +1.6

Or see this region's nucleotide sequence