Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2002

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2002 and Pf6N2E2_2003 are separated by 471 nucleotides Pf6N2E2_2002 - hypothetical protein, at 2,372,980 to 2,374,761 _2002 Pf6N2E2_2003 - hypothetical protein, at 2,375,233 to 2,376,387 _2003 Position (kb) 2372 2373 2374 2375Strain fitness (log2 ratio) -2 -1 0 1 2at 2372.059 kb on + strandat 2372.500 kb on - strandat 2372.663 kb on + strandat 2372.717 kb on - strandat 2372.937 kb on - strandat 2373.002 kb on - strandat 2373.153 kb on - strandat 2373.716 kb on - strand, within Pf6N2E2_2002at 2373.948 kb on + strand, within Pf6N2E2_2002at 2374.075 kb on - strand, within Pf6N2E2_2002at 2374.078 kb on - strand, within Pf6N2E2_2002at 2374.146 kb on + strand, within Pf6N2E2_2002at 2374.387 kb on - strand, within Pf6N2E2_2002at 2374.389 kb on + strand, within Pf6N2E2_2002at 2375.066 kb on - strandat 2375.600 kb on + strand, within Pf6N2E2_2003at 2375.670 kb on + strand, within Pf6N2E2_2003

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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2,372,059 + -0.6
2,372,500 - +0.4
2,372,663 + -1.6
2,372,717 - -1.9
2,372,937 - -0.4
2,373,002 - +1.1
2,373,153 - +0.6
2,373,716 - Pf6N2E2_2002 0.41 -1.0
2,373,948 + Pf6N2E2_2002 0.54 -0.5
2,374,075 - Pf6N2E2_2002 0.61 -0.0
2,374,078 - Pf6N2E2_2002 0.62 -0.6
2,374,146 + Pf6N2E2_2002 0.65 -0.9
2,374,387 - Pf6N2E2_2002 0.79 -0.1
2,374,389 + Pf6N2E2_2002 0.79 -2.0
2,375,066 - +0.1
2,375,600 + Pf6N2E2_2003 0.32 +2.4
2,375,670 + Pf6N2E2_2003 0.38 +0.1

Or see this region's nucleotide sequence