Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_18

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_18 and Pf6N2E2_19 are separated by 10 nucleotides Pf6N2E2_18 - Outer membrane pyoverdine eflux protein, at 51,075 to 52,469 _18 Pf6N2E2_19 - Pyoverdine efflux carrier and ATP binding protein, at 52,480 to 54,450 _19 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2at 50.082 kb on + strandat 50.130 kb on + strandat 50.130 kb on + strandat 50.131 kb on - strandat 50.131 kb on - strandat 50.152 kb on + strandat 50.152 kb on + strandat 50.153 kb on - strandat 50.153 kb on - strandat 50.171 kb on + strandat 50.171 kb on + strandat 50.171 kb on + strandat 50.171 kb on + strandat 50.171 kb on + strandat 50.172 kb on - strandat 50.172 kb on - strandat 50.172 kb on - strandat 50.237 kb on + strandat 50.237 kb on + strandat 50.237 kb on + strandat 50.237 kb on + strandat 50.237 kb on + strandat 50.237 kb on + strandat 50.332 kb on + strandat 50.333 kb on - strandat 50.335 kb on - strandat 50.348 kb on + strandat 50.349 kb on - strandat 50.367 kb on + strandat 50.367 kb on + strandat 50.367 kb on + strandat 50.368 kb on - strandat 50.391 kb on + strandat 50.397 kb on + strandat 50.397 kb on + strandat 50.398 kb on - strandat 50.398 kb on - strandat 50.432 kb on + strandat 50.433 kb on - strandat 50.433 kb on - strandat 50.466 kb on + strandat 50.466 kb on + strandat 50.466 kb on + strandat 50.466 kb on + strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.467 kb on - strandat 50.471 kb on - strandat 50.471 kb on - strandat 50.471 kb on - strandat 50.481 kb on + strandat 50.517 kb on + strandat 50.528 kb on - strandat 50.563 kb on - strandat 50.851 kb on + strandat 50.854 kb on + strandat 50.921 kb on + strandat 50.922 kb on - strandat 50.929 kb on - strandat 50.936 kb on + strandat 50.991 kb on + strandat 51.076 kb on + strandat 51.077 kb on - strandat 51.077 kb on - strandat 51.109 kb on + strandat 51.144 kb on + strandat 51.158 kb on + strandat 51.172 kb on + strandat 51.200 kb on + strandat 51.467 kb on - strand, within Pf6N2E2_18at 51.467 kb on - strand, within Pf6N2E2_18at 51.734 kb on + strand, within Pf6N2E2_18at 51.735 kb on - strand, within Pf6N2E2_18at 51.937 kb on + strand, within Pf6N2E2_18at 51.937 kb on + strand, within Pf6N2E2_18at 51.938 kb on - strand, within Pf6N2E2_18at 51.938 kb on - strand, within Pf6N2E2_18at 51.938 kb on - strand, within Pf6N2E2_18at 52.060 kb on + strand, within Pf6N2E2_18at 52.060 kb on + strand, within Pf6N2E2_18at 52.061 kb on - strand, within Pf6N2E2_18at 52.084 kb on + strand, within Pf6N2E2_18at 52.084 kb on + strand, within Pf6N2E2_18at 52.085 kb on - strand, within Pf6N2E2_18at 52.087 kb on + strand, within Pf6N2E2_18at 52.088 kb on - strand, within Pf6N2E2_18at 52.130 kb on - strand, within Pf6N2E2_18at 53.012 kb on + strand, within Pf6N2E2_19at 53.012 kb on + strand, within Pf6N2E2_19at 53.058 kb on - strand, within Pf6N2E2_19at 53.160 kb on - strand, within Pf6N2E2_19at 53.261 kb on + strand, within Pf6N2E2_19at 53.261 kb on + strand, within Pf6N2E2_19at 53.262 kb on - strand, within Pf6N2E2_19at 53.324 kb on + strand, within Pf6N2E2_19at 53.325 kb on - strand, within Pf6N2E2_19at 53.325 kb on - strand, within Pf6N2E2_19at 53.325 kb on - strand, within Pf6N2E2_19

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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50,082 + +1.3
50,130 + -0.5
50,130 + -0.4
50,131 - +0.2
50,131 - +0.7
50,152 + -0.5
50,152 + -0.5
50,153 - +0.9
50,153 - -1.2
50,171 + -2.0
50,171 + -0.1
50,171 + -1.3
50,171 + -0.8
50,171 + -0.9
50,172 - -0.2
50,172 - -0.4
50,172 - +0.2
50,237 + +0.2
50,237 + -0.1
50,237 + +1.4
50,237 + +1.7
50,237 + +1.5
50,237 + -0.1
50,332 + +0.4
50,333 - +0.6
50,335 - +0.5
50,348 + -1.0
50,349 - -0.5
50,367 + +0.5
50,367 + +0.8
50,367 + +1.0
50,368 - +0.3
50,391 + +1.2
50,397 + -2.2
50,397 + -0.3
50,398 - +2.2
50,398 - +0.3
50,432 + +1.4
50,433 - +0.5
50,433 - -0.3
50,466 + +0.0
50,466 + +0.2
50,466 + +0.2
50,466 + +1.0
50,467 - -0.1
50,467 - +1.5
50,467 - -0.7
50,467 - +0.2
50,471 - -0.3
50,471 - +0.1
50,471 - -0.1
50,481 + -0.1
50,517 + -0.3
50,528 - -2.4
50,563 - -0.7
50,851 + -0.2
50,854 + +0.3
50,921 + +0.4
50,922 - -1.1
50,929 - +0.2
50,936 + -0.1
50,991 + -0.3
51,076 + -0.3
51,077 - +0.2
51,077 - +0.3
51,109 + +0.8
51,144 + +0.5
51,158 + -0.5
51,172 + +0.1
51,200 + -0.9
51,467 - Pf6N2E2_18 0.28 +0.2
51,467 - Pf6N2E2_18 0.28 +1.1
51,734 + Pf6N2E2_18 0.47 -1.2
51,735 - Pf6N2E2_18 0.47 -1.8
51,937 + Pf6N2E2_18 0.62 -1.3
51,937 + Pf6N2E2_18 0.62 -0.1
51,938 - Pf6N2E2_18 0.62 -0.2
51,938 - Pf6N2E2_18 0.62 +1.3
51,938 - Pf6N2E2_18 0.62 -0.2
52,060 + Pf6N2E2_18 0.71 +0.1
52,060 + Pf6N2E2_18 0.71 -1.0
52,061 - Pf6N2E2_18 0.71 -0.4
52,084 + Pf6N2E2_18 0.72 +0.5
52,084 + Pf6N2E2_18 0.72 +0.5
52,085 - Pf6N2E2_18 0.72 -0.5
52,087 + Pf6N2E2_18 0.73 -0.2
52,088 - Pf6N2E2_18 0.73 +0.1
52,130 - Pf6N2E2_18 0.76 -0.5
53,012 + Pf6N2E2_19 0.27 -1.5
53,012 + Pf6N2E2_19 0.27 +0.8
53,058 - Pf6N2E2_19 0.29 -0.6
53,160 - Pf6N2E2_19 0.35 -0.5
53,261 + Pf6N2E2_19 0.40 -1.3
53,261 + Pf6N2E2_19 0.40 +0.9
53,262 - Pf6N2E2_19 0.40 -0.1
53,324 + Pf6N2E2_19 0.43 -1.7
53,325 - Pf6N2E2_19 0.43 +0.7
53,325 - Pf6N2E2_19 0.43 +0.5
53,325 - Pf6N2E2_19 0.43 +0.4

Or see this region's nucleotide sequence