Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1337

Experiment: molybdate 0.25 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1336 and Pf6N2E2_1337 are separated by 237 nucleotidesPf6N2E2_1337 and Pf6N2E2_1338 are separated by 199 nucleotides Pf6N2E2_1336 - AraC family transcription regulator, at 1,571,947 to 1,572,627 _1336 Pf6N2E2_1337 - Cys regulon transcriptional activator CysB, at 1,572,865 to 1,573,776 _1337 Pf6N2E2_1338 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 1,573,976 to 1,575,016 _1338 Position (kb) 1572 1573 1574Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1571.865 kb on - strandat 1571.865 kb on - strandat 1572.053 kb on - strand, within Pf6N2E2_1336at 1572.111 kb on + strand, within Pf6N2E2_1336at 1572.112 kb on - strand, within Pf6N2E2_1336at 1572.237 kb on - strand, within Pf6N2E2_1336at 1572.400 kb on - strand, within Pf6N2E2_1336at 1572.658 kb on + strandat 1572.658 kb on + strandat 1572.658 kb on + strandat 1572.829 kb on + strandat 1572.829 kb on + strandat 1572.829 kb on + strandat 1572.829 kb on + strandat 1572.829 kb on + strandat 1572.830 kb on - strandat 1572.830 kb on - strandat 1572.830 kb on - strandat 1572.830 kb on - strandat 1572.830 kb on - strandat 1572.830 kb on - strandat 1572.834 kb on + strandat 1572.874 kb on + strandat 1572.875 kb on - strandat 1572.896 kb on - strandat 1572.896 kb on - strandat 1572.896 kb on - strandat 1572.949 kb on + strandat 1573.335 kb on + strand, within Pf6N2E2_1337at 1573.335 kb on + strand, within Pf6N2E2_1337at 1573.484 kb on - strand, within Pf6N2E2_1337at 1573.624 kb on + strand, within Pf6N2E2_1337at 1573.624 kb on + strand, within Pf6N2E2_1337at 1573.624 kb on + strand, within Pf6N2E2_1337at 1573.624 kb on + strand, within Pf6N2E2_1337at 1573.625 kb on - strand, within Pf6N2E2_1337at 1573.713 kb on + strandat 1573.742 kb on - strandat 1573.742 kb on - strandat 1573.815 kb on + strandat 1573.815 kb on + strandat 1573.820 kb on - strandat 1573.971 kb on + strandat 1573.971 kb on + strandat 1573.971 kb on + strandat 1573.971 kb on + strandat 1574.469 kb on + strand, within Pf6N2E2_1338at 1574.469 kb on + strand, within Pf6N2E2_1338at 1574.470 kb on - strand, within Pf6N2E2_1338at 1574.470 kb on - strand, within Pf6N2E2_1338at 1574.470 kb on - strand, within Pf6N2E2_1338at 1574.470 kb on - strand, within Pf6N2E2_1338at 1574.520 kb on + strand, within Pf6N2E2_1338at 1574.521 kb on - strand, within Pf6N2E2_1338at 1574.521 kb on - strand, within Pf6N2E2_1338at 1574.619 kb on + strand, within Pf6N2E2_1338at 1574.620 kb on - strand, within Pf6N2E2_1338at 1574.643 kb on + strand, within Pf6N2E2_1338at 1574.643 kb on + strand, within Pf6N2E2_1338at 1574.643 kb on + strand, within Pf6N2E2_1338at 1574.643 kb on + strand, within Pf6N2E2_1338at 1574.644 kb on - strand, within Pf6N2E2_1338at 1574.644 kb on - strand, within Pf6N2E2_1338at 1574.682 kb on + strand, within Pf6N2E2_1338at 1574.682 kb on + strand, within Pf6N2E2_1338at 1574.683 kb on - strand, within Pf6N2E2_1338at 1574.683 kb on - strand, within Pf6N2E2_1338at 1574.683 kb on - strand, within Pf6N2E2_1338at 1574.683 kb on - strand, within Pf6N2E2_1338at 1574.683 kb on - strand, within Pf6N2E2_1338

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Per-strain Table

Position Strand Gene LocusTag Fraction molybdate 0.25 M
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1,571,865 - -0.8
1,571,865 - +0.2
1,572,053 - Pf6N2E2_1336 0.16 +0.1
1,572,111 + Pf6N2E2_1336 0.24 +0.8
1,572,112 - Pf6N2E2_1336 0.24 -0.2
1,572,237 - Pf6N2E2_1336 0.43 -0.1
1,572,400 - Pf6N2E2_1336 0.67 -1.3
1,572,658 + -0.8
1,572,658 + +0.2
1,572,658 + +0.2
1,572,829 + -0.1
1,572,829 + +0.9
1,572,829 + +0.7
1,572,829 + +0.7
1,572,829 + -0.6
1,572,830 - +0.7
1,572,830 - -0.4
1,572,830 - +2.4
1,572,830 - -1.8
1,572,830 - +0.4
1,572,830 - +1.0
1,572,834 + +0.4
1,572,874 + -2.0
1,572,875 - +1.3
1,572,896 - +0.6
1,572,896 - -0.0
1,572,896 - -0.1
1,572,949 + +0.7
1,573,335 + Pf6N2E2_1337 0.52 +0.3
1,573,335 + Pf6N2E2_1337 0.52 -2.7
1,573,484 - Pf6N2E2_1337 0.68 -0.7
1,573,624 + Pf6N2E2_1337 0.83 -0.5
1,573,624 + Pf6N2E2_1337 0.83 -0.6
1,573,624 + Pf6N2E2_1337 0.83 -0.8
1,573,624 + Pf6N2E2_1337 0.83 -0.4
1,573,625 - Pf6N2E2_1337 0.83 -1.3
1,573,713 + -1.1
1,573,742 - +0.3
1,573,742 - +1.6
1,573,815 + -0.4
1,573,815 + +0.0
1,573,820 - +3.6
1,573,971 + +0.6
1,573,971 + +0.2
1,573,971 + -0.2
1,573,971 + +0.6
1,574,469 + Pf6N2E2_1338 0.47 -1.7
1,574,469 + Pf6N2E2_1338 0.47 +1.0
1,574,470 - Pf6N2E2_1338 0.47 +0.7
1,574,470 - Pf6N2E2_1338 0.47 -0.4
1,574,470 - Pf6N2E2_1338 0.47 -1.1
1,574,470 - Pf6N2E2_1338 0.47 +0.0
1,574,520 + Pf6N2E2_1338 0.52 +0.4
1,574,521 - Pf6N2E2_1338 0.52 +0.4
1,574,521 - Pf6N2E2_1338 0.52 +1.8
1,574,619 + Pf6N2E2_1338 0.62 +0.6
1,574,620 - Pf6N2E2_1338 0.62 +1.9
1,574,643 + Pf6N2E2_1338 0.64 -0.6
1,574,643 + Pf6N2E2_1338 0.64 +0.6
1,574,643 + Pf6N2E2_1338 0.64 +0.2
1,574,643 + Pf6N2E2_1338 0.64 +0.2
1,574,644 - Pf6N2E2_1338 0.64 -0.5
1,574,644 - Pf6N2E2_1338 0.64 -1.3
1,574,682 + Pf6N2E2_1338 0.68 -1.3
1,574,682 + Pf6N2E2_1338 0.68 +0.5
1,574,683 - Pf6N2E2_1338 0.68 -1.5
1,574,683 - Pf6N2E2_1338 0.68 -1.1
1,574,683 - Pf6N2E2_1338 0.68 +1.3
1,574,683 - Pf6N2E2_1338 0.68 -1.3
1,574,683 - Pf6N2E2_1338 0.68 -0.2

Or see this region's nucleotide sequence