Experiment: molybdate 0.25 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1336 and Pf6N2E2_1337 are separated by 237 nucleotides Pf6N2E2_1337 and Pf6N2E2_1338 are separated by 199 nucleotides
Pf6N2E2_1336 - AraC family transcription regulator, at 1,571,947 to 1,572,627
_1336
Pf6N2E2_1337 - Cys regulon transcriptional activator CysB, at 1,572,865 to 1,573,776
_1337
Pf6N2E2_1338 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 1,573,976 to 1,575,016
_1338
Position (kb)
1572
1573
1574 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1571.865 kb on - strand at 1571.865 kb on - strand at 1572.053 kb on - strand, within Pf6N2E2_1336 at 1572.111 kb on + strand, within Pf6N2E2_1336 at 1572.112 kb on - strand, within Pf6N2E2_1336 at 1572.237 kb on - strand, within Pf6N2E2_1336 at 1572.400 kb on - strand, within Pf6N2E2_1336 at 1572.658 kb on + strand at 1572.658 kb on + strand at 1572.658 kb on + strand at 1572.829 kb on + strand at 1572.829 kb on + strand at 1572.829 kb on + strand at 1572.829 kb on + strand at 1572.829 kb on + strand at 1572.830 kb on - strand at 1572.830 kb on - strand at 1572.830 kb on - strand at 1572.830 kb on - strand at 1572.830 kb on - strand at 1572.830 kb on - strand at 1572.834 kb on + strand at 1572.874 kb on + strand at 1572.875 kb on - strand at 1572.896 kb on - strand at 1572.896 kb on - strand at 1572.896 kb on - strand at 1572.949 kb on + strand at 1573.335 kb on + strand, within Pf6N2E2_1337 at 1573.335 kb on + strand, within Pf6N2E2_1337 at 1573.484 kb on - strand, within Pf6N2E2_1337 at 1573.624 kb on + strand, within Pf6N2E2_1337 at 1573.624 kb on + strand, within Pf6N2E2_1337 at 1573.624 kb on + strand, within Pf6N2E2_1337 at 1573.624 kb on + strand, within Pf6N2E2_1337 at 1573.625 kb on - strand, within Pf6N2E2_1337 at 1573.713 kb on + strand at 1573.742 kb on - strand at 1573.742 kb on - strand at 1573.815 kb on + strand at 1573.815 kb on + strand at 1573.820 kb on - strand at 1573.971 kb on + strand at 1573.971 kb on + strand at 1573.971 kb on + strand at 1573.971 kb on + strand at 1574.469 kb on + strand, within Pf6N2E2_1338 at 1574.469 kb on + strand, within Pf6N2E2_1338 at 1574.470 kb on - strand, within Pf6N2E2_1338 at 1574.470 kb on - strand, within Pf6N2E2_1338 at 1574.470 kb on - strand, within Pf6N2E2_1338 at 1574.470 kb on - strand, within Pf6N2E2_1338 at 1574.520 kb on + strand, within Pf6N2E2_1338 at 1574.521 kb on - strand, within Pf6N2E2_1338 at 1574.521 kb on - strand, within Pf6N2E2_1338 at 1574.619 kb on + strand, within Pf6N2E2_1338 at 1574.620 kb on - strand, within Pf6N2E2_1338 at 1574.643 kb on + strand, within Pf6N2E2_1338 at 1574.643 kb on + strand, within Pf6N2E2_1338 at 1574.643 kb on + strand, within Pf6N2E2_1338 at 1574.643 kb on + strand, within Pf6N2E2_1338 at 1574.644 kb on - strand, within Pf6N2E2_1338 at 1574.644 kb on - strand, within Pf6N2E2_1338 at 1574.682 kb on + strand, within Pf6N2E2_1338 at 1574.682 kb on + strand, within Pf6N2E2_1338 at 1574.683 kb on - strand, within Pf6N2E2_1338 at 1574.683 kb on - strand, within Pf6N2E2_1338 at 1574.683 kb on - strand, within Pf6N2E2_1338 at 1574.683 kb on - strand, within Pf6N2E2_1338 at 1574.683 kb on - strand, within Pf6N2E2_1338
Per-strain Table
Position Strand Gene LocusTag Fraction molybdate 0.25 M remove 1,571,865 - -0.8 1,571,865 - +0.2 1,572,053 - Pf6N2E2_1336 0.16 +0.1 1,572,111 + Pf6N2E2_1336 0.24 +0.8 1,572,112 - Pf6N2E2_1336 0.24 -0.2 1,572,237 - Pf6N2E2_1336 0.43 -0.1 1,572,400 - Pf6N2E2_1336 0.67 -1.3 1,572,658 + -0.8 1,572,658 + +0.2 1,572,658 + +0.2 1,572,829 + -0.1 1,572,829 + +0.9 1,572,829 + +0.7 1,572,829 + +0.7 1,572,829 + -0.6 1,572,830 - +0.7 1,572,830 - -0.4 1,572,830 - +2.4 1,572,830 - -1.8 1,572,830 - +0.4 1,572,830 - +1.0 1,572,834 + +0.4 1,572,874 + -2.0 1,572,875 - +1.3 1,572,896 - +0.6 1,572,896 - -0.0 1,572,896 - -0.1 1,572,949 + +0.7 1,573,335 + Pf6N2E2_1337 0.52 +0.3 1,573,335 + Pf6N2E2_1337 0.52 -2.7 1,573,484 - Pf6N2E2_1337 0.68 -0.7 1,573,624 + Pf6N2E2_1337 0.83 -0.5 1,573,624 + Pf6N2E2_1337 0.83 -0.6 1,573,624 + Pf6N2E2_1337 0.83 -0.8 1,573,624 + Pf6N2E2_1337 0.83 -0.4 1,573,625 - Pf6N2E2_1337 0.83 -1.3 1,573,713 + -1.1 1,573,742 - +0.3 1,573,742 - +1.6 1,573,815 + -0.4 1,573,815 + +0.0 1,573,820 - +3.6 1,573,971 + +0.6 1,573,971 + +0.2 1,573,971 + -0.2 1,573,971 + +0.6 1,574,469 + Pf6N2E2_1338 0.47 -1.7 1,574,469 + Pf6N2E2_1338 0.47 +1.0 1,574,470 - Pf6N2E2_1338 0.47 +0.7 1,574,470 - Pf6N2E2_1338 0.47 -0.4 1,574,470 - Pf6N2E2_1338 0.47 -1.1 1,574,470 - Pf6N2E2_1338 0.47 +0.0 1,574,520 + Pf6N2E2_1338 0.52 +0.4 1,574,521 - Pf6N2E2_1338 0.52 +0.4 1,574,521 - Pf6N2E2_1338 0.52 +1.8 1,574,619 + Pf6N2E2_1338 0.62 +0.6 1,574,620 - Pf6N2E2_1338 0.62 +1.9 1,574,643 + Pf6N2E2_1338 0.64 -0.6 1,574,643 + Pf6N2E2_1338 0.64 +0.6 1,574,643 + Pf6N2E2_1338 0.64 +0.2 1,574,643 + Pf6N2E2_1338 0.64 +0.2 1,574,644 - Pf6N2E2_1338 0.64 -0.5 1,574,644 - Pf6N2E2_1338 0.64 -1.3 1,574,682 + Pf6N2E2_1338 0.68 -1.3 1,574,682 + Pf6N2E2_1338 0.68 +0.5 1,574,683 - Pf6N2E2_1338 0.68 -1.5 1,574,683 - Pf6N2E2_1338 0.68 -1.1 1,574,683 - Pf6N2E2_1338 0.68 +1.3 1,574,683 - Pf6N2E2_1338 0.68 -1.3 1,574,683 - Pf6N2E2_1338 0.68 -0.2
Or see this region's nucleotide sequence