Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08760 and PGA1_c08770 overlap by 8 nucleotides PGA1_c08770 and PGA1_c08780 are separated by 38 nucleotides PGA1_c08780 and PGA1_c08790 are separated by 1 nucleotides PGA1_c08790 and PGA1_c08800 are separated by 130 nucleotides
PGA1_c08760: PGA1_c08760 - sarcosine oxidase subunit alpha, at 903,382 to 906,303
_c08760
PGA1_c08770: PGA1_c08770 - putative sarcosine oxidase, subunit gamma, at 906,296 to 906,841
_c08770
PGA1_c08780: PGA1_c08780 - hypothetical protein, at 906,880 to 907,218
_c08780
PGA1_c08790: PGA1_c08790 - DNA primase DnaG, at 907,220 to 909,469
_c08790
PGA1_c08800: PGA1_c08800 - RNA polymerase sigma factor RpoD, at 909,600 to 911,588
_c08800
Position (kb) 907
908
909
910 Strain fitness (log2 ratio) -2
-1
0
1
2 at 906.223 kb on - strand at 906.225 kb on - strand at 906.240 kb on - strand at 906.269 kb on + strand at 906.436 kb on + strand, within PGA1_c08770 at 906.452 kb on + strand, within PGA1_c08770 at 906.522 kb on + strand, within PGA1_c08770 at 906.530 kb on - strand, within PGA1_c08770 at 906.551 kb on + strand, within PGA1_c08770 at 906.555 kb on - strand, within PGA1_c08770 at 906.570 kb on + strand, within PGA1_c08770 at 906.613 kb on + strand, within PGA1_c08770 at 906.623 kb on + strand, within PGA1_c08770 at 906.630 kb on + strand, within PGA1_c08770 at 906.679 kb on + strand, within PGA1_c08770 at 906.688 kb on + strand, within PGA1_c08770 at 906.886 kb on - strand at 906.887 kb on + strand at 906.969 kb on + strand, within PGA1_c08780 at 907.060 kb on + strand, within PGA1_c08780
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 906,223 - -0.0 906,225 - -0.2 906,240 - +1.7 906,269 + +0.7 906,436 + PGA1_c08770 0.26 -1.0 906,452 + PGA1_c08770 0.29 +2.0 906,522 + PGA1_c08770 0.41 -2.3 906,530 - PGA1_c08770 0.43 +1.0 906,551 + PGA1_c08770 0.47 +0.3 906,555 - PGA1_c08770 0.47 +0.7 906,570 + PGA1_c08770 0.50 -1.6 906,613 + PGA1_c08770 0.58 -1.5 906,623 + PGA1_c08770 0.60 -0.1 906,630 + PGA1_c08770 0.61 -1.6 906,679 + PGA1_c08770 0.70 -0.1 906,688 + PGA1_c08770 0.72 -0.3 906,886 - +1.6 906,887 + -1.6 906,969 + PGA1_c08780 0.26 +0.4 907,060 + PGA1_c08780 0.53 +0.9
Or see this region's nucleotide sequence