Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08720 and PGA1_c08730 are separated by 74 nucleotides PGA1_c08730 and PGA1_c08740 are separated by 113 nucleotides PGA1_c08740 and PGA1_c08750 are separated by 304 nucleotides
PGA1_c08720: PGA1_c08720 - hypothetical protein, at 898,011 to 899,693
_c08720
PGA1_c08730: PGA1_c08730 - hypothetical protein, at 899,768 to 899,938
_c08730
PGA1_c08740: PGA1_c08740 - glutamate dehydrogenase GluD, at 900,052 to 901,482
_c08740
PGA1_c08750: PGA1_c08750 - sarcosine oxidase subunit beta, at 901,787 to 903,040
_c08750
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 899.067 kb on + strand, within PGA1_c08720 at 899.072 kb on + strand, within PGA1_c08720 at 899.073 kb on - strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.075 kb on + strand, within PGA1_c08720 at 899.080 kb on - strand, within PGA1_c08720 at 899.083 kb on - strand, within PGA1_c08720 at 899.109 kb on + strand, within PGA1_c08720 at 899.158 kb on + strand, within PGA1_c08720 at 899.265 kb on - strand, within PGA1_c08720 at 899.274 kb on + strand, within PGA1_c08720 at 899.276 kb on + strand, within PGA1_c08720 at 899.277 kb on - strand, within PGA1_c08720 at 899.321 kb on + strand, within PGA1_c08720 at 899.399 kb on + strand, within PGA1_c08720 at 899.409 kb on + strand, within PGA1_c08720 at 899.417 kb on - strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.457 kb on + strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.465 kb on - strand, within PGA1_c08720 at 899.471 kb on + strand, within PGA1_c08720 at 899.480 kb on - strand, within PGA1_c08720 at 899.484 kb on - strand, within PGA1_c08720 at 899.502 kb on - strand, within PGA1_c08720 at 899.504 kb on + strand, within PGA1_c08720 at 899.514 kb on + strand, within PGA1_c08720 at 899.522 kb on - strand, within PGA1_c08720 at 899.548 kb on + strand at 899.555 kb on + strand at 899.580 kb on - strand at 899.580 kb on - strand at 899.585 kb on + strand at 899.626 kb on + strand at 899.644 kb on + strand at 899.647 kb on - strand at 899.649 kb on + strand at 899.649 kb on + strand at 899.657 kb on - strand at 899.657 kb on - strand at 899.689 kb on + strand at 899.711 kb on + strand at 899.717 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.719 kb on + strand at 899.724 kb on + strand at 899.725 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.727 kb on - strand at 899.732 kb on - strand at 899.755 kb on + strand at 899.756 kb on + strand at 899.756 kb on + strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.764 kb on - strand at 899.795 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.840 kb on - strand, within PGA1_c08730 at 899.852 kb on + strand, within PGA1_c08730 at 899.853 kb on + strand, within PGA1_c08730 at 899.857 kb on + strand, within PGA1_c08730 at 899.860 kb on - strand, within PGA1_c08730 at 899.862 kb on - strand, within PGA1_c08730 at 899.890 kb on + strand, within PGA1_c08730 at 899.906 kb on + strand, within PGA1_c08730 at 899.923 kb on + strand at 900.003 kb on - strand at 900.012 kb on + strand at 900.049 kb on - strand at 901.476 kb on + strand at 901.484 kb on - strand at 901.484 kb on - strand at 901.487 kb on + strand at 901.571 kb on - strand at 901.594 kb on + strand at 901.665 kb on + strand at 901.665 kb on + strand at 901.670 kb on + strand at 901.689 kb on + strand at 901.699 kb on + strand at 901.720 kb on + strand at 901.728 kb on - strand at 901.811 kb on - strand at 901.828 kb on - strand at 901.860 kb on + strand at 901.891 kb on + strand at 901.907 kb on + strand at 901.916 kb on - strand, within PGA1_c08750 at 901.916 kb on - strand, within PGA1_c08750 at 901.943 kb on + strand, within PGA1_c08750 at 901.998 kb on + strand, within PGA1_c08750 at 902.011 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.049 kb on + strand, within PGA1_c08750 at 902.056 kb on + strand, within PGA1_c08750 at 902.056 kb on + strand, within PGA1_c08750 at 902.077 kb on + strand, within PGA1_c08750 at 902.078 kb on - strand, within PGA1_c08750 at 902.085 kb on - strand, within PGA1_c08750 at 902.088 kb on + strand, within PGA1_c08750 at 902.088 kb on + strand, within PGA1_c08750 at 902.096 kb on - strand, within PGA1_c08750 at 902.096 kb on - strand, within PGA1_c08750 at 902.154 kb on + strand, within PGA1_c08750 at 902.164 kb on + strand, within PGA1_c08750 at 902.170 kb on - strand, within PGA1_c08750 at 902.172 kb on - strand, within PGA1_c08750 at 902.232 kb on + strand, within PGA1_c08750 at 902.260 kb on - strand, within PGA1_c08750 at 902.308 kb on + strand, within PGA1_c08750 at 902.308 kb on - strand, within PGA1_c08750 at 902.343 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.361 kb on + strand, within PGA1_c08750 at 902.376 kb on + strand, within PGA1_c08750 at 902.394 kb on + strand, within PGA1_c08750 at 902.440 kb on - strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.456 kb on + strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750 at 902.464 kb on - strand, within PGA1_c08750
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 899,067 + PGA1_c08720 0.63 -1.8 899,072 + PGA1_c08720 0.63 -1.9 899,073 - PGA1_c08720 0.63 -0.0 899,075 + PGA1_c08720 0.63 -0.4 899,075 + PGA1_c08720 0.63 +3.3 899,080 - PGA1_c08720 0.64 -0.1 899,083 - PGA1_c08720 0.64 -1.6 899,109 + PGA1_c08720 0.65 -2.2 899,158 + PGA1_c08720 0.68 +0.5 899,265 - PGA1_c08720 0.75 -0.9 899,274 + PGA1_c08720 0.75 +0.9 899,276 + PGA1_c08720 0.75 -1.2 899,277 - PGA1_c08720 0.75 +0.1 899,321 + PGA1_c08720 0.78 -0.6 899,399 + PGA1_c08720 0.82 +0.5 899,409 + PGA1_c08720 0.83 +0.4 899,417 - PGA1_c08720 0.84 -3.0 899,457 + PGA1_c08720 0.86 +0.3 899,457 + PGA1_c08720 0.86 -0.4 899,457 + PGA1_c08720 0.86 +1.0 899,465 - PGA1_c08720 0.86 -0.8 899,465 - PGA1_c08720 0.86 -1.6 899,471 + PGA1_c08720 0.87 +1.6 899,480 - PGA1_c08720 0.87 -0.1 899,484 - PGA1_c08720 0.88 -0.6 899,502 - PGA1_c08720 0.89 -0.2 899,504 + PGA1_c08720 0.89 -0.0 899,514 + PGA1_c08720 0.89 -1.6 899,522 - PGA1_c08720 0.90 -0.7 899,548 + +0.7 899,555 + +0.5 899,580 - +1.7 899,580 - +0.7 899,585 + -0.3 899,626 + -0.2 899,644 + +1.7 899,647 - +1.3 899,649 + -0.3 899,649 + +0.0 899,657 - -0.2 899,657 - -1.8 899,689 + -2.1 899,711 + +1.6 899,717 + +0.9 899,719 + +1.1 899,719 + -0.6 899,719 + -0.4 899,719 + +1.0 899,719 + +0.3 899,719 + -0.3 899,719 + +0.5 899,719 + -2.1 899,719 + -0.9 899,724 + +0.6 899,725 - -2.3 899,727 - -1.9 899,727 - +0.7 899,727 - +0.7 899,727 - +3.2 899,727 - -0.7 899,727 - +0.5 899,727 - +1.4 899,732 - +0.1 899,755 + -2.1 899,756 + -0.1 899,756 + -1.4 899,764 - -1.5 899,764 - +1.0 899,764 - -0.1 899,795 - PGA1_c08730 0.16 +0.2 899,840 - PGA1_c08730 0.42 -0.3 899,840 - PGA1_c08730 0.42 +0.7 899,852 + PGA1_c08730 0.49 -1.6 899,853 + PGA1_c08730 0.50 +0.1 899,857 + PGA1_c08730 0.52 -0.6 899,860 - PGA1_c08730 0.54 -2.2 899,862 - PGA1_c08730 0.55 -0.2 899,890 + PGA1_c08730 0.71 -1.0 899,906 + PGA1_c08730 0.81 +0.2 899,923 + +0.1 900,003 - -1.0 900,012 + +1.0 900,049 - -1.9 901,476 + +1.5 901,484 - -1.8 901,484 - -0.4 901,487 + -0.4 901,571 - +0.6 901,594 + +0.2 901,665 + -0.1 901,665 + +1.2 901,670 + +1.9 901,689 + +1.5 901,699 + +1.9 901,720 + -1.6 901,728 - -0.1 901,811 - -1.9 901,828 - +0.7 901,860 + +0.1 901,891 + +0.2 901,907 + +3.0 901,916 - PGA1_c08750 0.10 -1.9 901,916 - PGA1_c08750 0.10 -0.1 901,943 + PGA1_c08750 0.12 +1.6 901,998 + PGA1_c08750 0.17 -2.0 902,011 + PGA1_c08750 0.18 +0.7 902,049 + PGA1_c08750 0.21 +0.8 902,049 + PGA1_c08750 0.21 +0.5 902,049 + PGA1_c08750 0.21 -0.3 902,056 + PGA1_c08750 0.21 +0.2 902,056 + PGA1_c08750 0.21 -0.6 902,077 + PGA1_c08750 0.23 +0.3 902,078 - PGA1_c08750 0.23 +0.1 902,085 - PGA1_c08750 0.24 +0.3 902,088 + PGA1_c08750 0.24 -1.3 902,088 + PGA1_c08750 0.24 +0.2 902,096 - PGA1_c08750 0.25 +0.9 902,096 - PGA1_c08750 0.25 -2.7 902,154 + PGA1_c08750 0.29 -0.6 902,164 + PGA1_c08750 0.30 -0.7 902,170 - PGA1_c08750 0.31 -0.6 902,172 - PGA1_c08750 0.31 -0.3 902,232 + PGA1_c08750 0.35 -0.0 902,260 - PGA1_c08750 0.38 -1.2 902,308 + PGA1_c08750 0.42 +1.0 902,308 - PGA1_c08750 0.42 +0.9 902,343 + PGA1_c08750 0.44 +0.6 902,361 + PGA1_c08750 0.46 +0.8 902,361 + PGA1_c08750 0.46 +1.1 902,376 + PGA1_c08750 0.47 -0.0 902,394 + PGA1_c08750 0.48 -0.7 902,440 - PGA1_c08750 0.52 +1.1 902,456 + PGA1_c08750 0.53 +0.7 902,456 + PGA1_c08750 0.53 -0.1 902,464 - PGA1_c08750 0.54 +0.3 902,464 - PGA1_c08750 0.54 -0.5 902,464 - PGA1_c08750 0.54 -0.7 902,464 - PGA1_c08750 0.54 +1.1 902,464 - PGA1_c08750 0.54 -1.1 902,464 - PGA1_c08750 0.54 -0.2
Or see this region's nucleotide sequence