Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07240 and PGA1_c07250 overlap by 1 nucleotides PGA1_c07250 and PGA1_c07260 are separated by 17 nucleotides
PGA1_c07240: PGA1_c07240 - 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92) <small>(from data)</small>, at 744,289 to 745,281
_c07240
PGA1_c07250: PGA1_c07250 - 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) <small>(from data)</small>, at 745,281 to 747,155
_c07250
PGA1_c07260: PGA1_c07260 - putative inositol 2-dehydrogenase, at 747,173 to 748,378
_c07260
Position (kb) 745
746
747
748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 744.310 kb on - strand at 744.352 kb on + strand at 744.376 kb on - strand at 744.442 kb on - strand, within PGA1_c07240 at 744.571 kb on + strand, within PGA1_c07240 at 744.627 kb on - strand, within PGA1_c07240 at 744.723 kb on - strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.733 kb on + strand, within PGA1_c07240 at 744.740 kb on + strand, within PGA1_c07240 at 744.741 kb on - strand, within PGA1_c07240 at 744.789 kb on + strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.792 kb on - strand, within PGA1_c07240 at 744.827 kb on + strand, within PGA1_c07240 at 744.853 kb on - strand, within PGA1_c07240 at 744.862 kb on + strand, within PGA1_c07240 at 744.870 kb on - strand, within PGA1_c07240 at 744.889 kb on - strand, within PGA1_c07240 at 744.944 kb on - strand, within PGA1_c07240 at 744.969 kb on + strand, within PGA1_c07240 at 745.017 kb on + strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.049 kb on - strand, within PGA1_c07240 at 745.051 kb on + strand, within PGA1_c07240 at 745.079 kb on + strand, within PGA1_c07240 at 745.089 kb on + strand, within PGA1_c07240 at 745.206 kb on + strand at 745.206 kb on + strand at 745.206 kb on + strand at 745.214 kb on - strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.251 kb on + strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.259 kb on - strand at 745.288 kb on + strand at 745.296 kb on - strand at 745.383 kb on + strand at 745.398 kb on + strand at 745.406 kb on - strand at 745.462 kb on + strand at 745.470 kb on - strand, within PGA1_c07250 at 745.501 kb on + strand, within PGA1_c07250 at 745.509 kb on - strand, within PGA1_c07250 at 745.514 kb on + strand, within PGA1_c07250 at 745.518 kb on + strand, within PGA1_c07250 at 745.526 kb on - strand, within PGA1_c07250 at 745.564 kb on - strand, within PGA1_c07250 at 745.573 kb on - strand, within PGA1_c07250 at 745.617 kb on - strand, within PGA1_c07250 at 745.634 kb on + strand, within PGA1_c07250 at 745.696 kb on - strand, within PGA1_c07250 at 745.740 kb on + strand, within PGA1_c07250 at 745.765 kb on + strand, within PGA1_c07250 at 745.767 kb on - strand, within PGA1_c07250 at 745.792 kb on - strand, within PGA1_c07250 at 745.861 kb on - strand, within PGA1_c07250 at 745.907 kb on + strand, within PGA1_c07250 at 745.917 kb on + strand, within PGA1_c07250 at 745.958 kb on + strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 745.966 kb on - strand, within PGA1_c07250 at 746.003 kb on + strand, within PGA1_c07250 at 746.047 kb on + strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.072 kb on - strand, within PGA1_c07250 at 746.083 kb on + strand, within PGA1_c07250 at 746.151 kb on + strand, within PGA1_c07250 at 746.189 kb on + strand, within PGA1_c07250 at 746.306 kb on + strand, within PGA1_c07250 at 746.306 kb on + strand, within PGA1_c07250 at 746.334 kb on - strand, within PGA1_c07250 at 746.355 kb on + strand, within PGA1_c07250 at 746.370 kb on + strand, within PGA1_c07250 at 746.400 kb on + strand, within PGA1_c07250 at 746.402 kb on + strand, within PGA1_c07250 at 746.410 kb on + strand, within PGA1_c07250 at 746.426 kb on - strand, within PGA1_c07250 at 746.468 kb on + strand, within PGA1_c07250 at 746.487 kb on - strand, within PGA1_c07250 at 746.489 kb on + strand, within PGA1_c07250 at 746.504 kb on + strand, within PGA1_c07250 at 746.506 kb on - strand, within PGA1_c07250 at 746.512 kb on - strand, within PGA1_c07250 at 746.512 kb on - strand, within PGA1_c07250 at 746.555 kb on + strand, within PGA1_c07250 at 746.563 kb on + strand, within PGA1_c07250 at 746.571 kb on - strand, within PGA1_c07250 at 746.576 kb on - strand, within PGA1_c07250 at 746.709 kb on - strand, within PGA1_c07250 at 746.709 kb on - strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.829 kb on + strand, within PGA1_c07250 at 746.837 kb on - strand, within PGA1_c07250 at 746.837 kb on - strand, within PGA1_c07250 at 746.844 kb on + strand, within PGA1_c07250 at 746.852 kb on + strand, within PGA1_c07250 at 746.875 kb on - strand, within PGA1_c07250 at 746.937 kb on + strand, within PGA1_c07250 at 746.937 kb on - strand, within PGA1_c07250 at 747.035 kb on + strand at 747.078 kb on - strand at 747.079 kb on + strand at 747.087 kb on - strand at 747.167 kb on + strand at 747.169 kb on - strand at 747.276 kb on - strand at 747.356 kb on + strand, within PGA1_c07260 at 747.363 kb on + strand, within PGA1_c07260 at 747.461 kb on - strand, within PGA1_c07260 at 747.492 kb on - strand, within PGA1_c07260 at 747.554 kb on + strand, within PGA1_c07260 at 747.557 kb on - strand, within PGA1_c07260 at 747.642 kb on - strand, within PGA1_c07260 at 747.670 kb on + strand, within PGA1_c07260 at 747.679 kb on - strand, within PGA1_c07260 at 747.706 kb on + strand, within PGA1_c07260 at 747.724 kb on - strand, within PGA1_c07260 at 747.803 kb on - strand, within PGA1_c07260 at 747.804 kb on - strand, within PGA1_c07260 at 747.804 kb on - strand, within PGA1_c07260 at 747.806 kb on + strand, within PGA1_c07260 at 747.812 kb on + strand, within PGA1_c07260 at 747.898 kb on + strand, within PGA1_c07260 at 747.898 kb on + strand, within PGA1_c07260 at 747.906 kb on - strand, within PGA1_c07260 at 747.906 kb on - strand, within PGA1_c07260 at 747.906 kb on - strand, within PGA1_c07260 at 747.945 kb on - strand, within PGA1_c07260 at 747.947 kb on + strand, within PGA1_c07260 at 748.052 kb on + strand, within PGA1_c07260 at 748.090 kb on - strand, within PGA1_c07260 at 748.101 kb on + strand, within PGA1_c07260 at 748.109 kb on - strand, within PGA1_c07260 at 748.139 kb on - strand, within PGA1_c07260 at 748.147 kb on + strand, within PGA1_c07260
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 744,310 - +0.9 744,352 + -1.6 744,376 - -0.7 744,442 - PGA1_c07240 0.15 -1.9 744,571 + PGA1_c07240 0.28 +0.8 744,627 - PGA1_c07240 0.34 -0.1 744,723 - PGA1_c07240 0.44 -0.3 744,733 + PGA1_c07240 0.45 +0.5 744,733 + PGA1_c07240 0.45 -0.0 744,740 + PGA1_c07240 0.45 -2.8 744,741 - PGA1_c07240 0.46 -1.9 744,789 + PGA1_c07240 0.50 +0.7 744,792 - PGA1_c07240 0.51 -0.7 744,792 - PGA1_c07240 0.51 +2.7 744,827 + PGA1_c07240 0.54 -1.3 744,853 - PGA1_c07240 0.57 -0.9 744,862 + PGA1_c07240 0.58 -2.1 744,870 - PGA1_c07240 0.59 -1.5 744,889 - PGA1_c07240 0.60 -0.1 744,944 - PGA1_c07240 0.66 -0.5 744,969 + PGA1_c07240 0.68 -0.4 745,017 + PGA1_c07240 0.73 +0.9 745,049 - PGA1_c07240 0.77 -0.2 745,049 - PGA1_c07240 0.77 +1.0 745,051 + PGA1_c07240 0.77 +0.7 745,079 + PGA1_c07240 0.80 -0.6 745,089 + PGA1_c07240 0.81 -0.3 745,206 + +1.0 745,206 + +0.2 745,206 + -1.3 745,214 - -0.6 745,251 + +1.0 745,251 + -1.6 745,251 + +0.3 745,251 + +2.0 745,251 + -0.7 745,259 - -1.3 745,259 - -0.6 745,259 - +0.8 745,288 + -1.3 745,296 - -2.1 745,383 + -0.2 745,398 + -0.1 745,406 - +0.6 745,462 + -0.1 745,470 - PGA1_c07250 0.10 +0.7 745,501 + PGA1_c07250 0.12 +0.9 745,509 - PGA1_c07250 0.12 -0.5 745,514 + PGA1_c07250 0.12 +0.7 745,518 + PGA1_c07250 0.13 +0.8 745,526 - PGA1_c07250 0.13 +0.5 745,564 - PGA1_c07250 0.15 +0.5 745,573 - PGA1_c07250 0.16 +0.4 745,617 - PGA1_c07250 0.18 +1.9 745,634 + PGA1_c07250 0.19 -0.3 745,696 - PGA1_c07250 0.22 +0.6 745,740 + PGA1_c07250 0.24 -2.6 745,765 + PGA1_c07250 0.26 +1.4 745,767 - PGA1_c07250 0.26 +0.4 745,792 - PGA1_c07250 0.27 -0.6 745,861 - PGA1_c07250 0.31 -1.4 745,907 + PGA1_c07250 0.33 +1.1 745,917 + PGA1_c07250 0.34 +2.1 745,958 + PGA1_c07250 0.36 +0.7 745,966 - PGA1_c07250 0.37 +0.4 745,966 - PGA1_c07250 0.37 +0.8 746,003 + PGA1_c07250 0.39 +0.1 746,047 + PGA1_c07250 0.41 -0.9 746,072 - PGA1_c07250 0.42 +0.5 746,072 - PGA1_c07250 0.42 +1.3 746,083 + PGA1_c07250 0.43 +1.5 746,151 + PGA1_c07250 0.46 -1.3 746,189 + PGA1_c07250 0.48 -1.5 746,306 + PGA1_c07250 0.55 -0.9 746,306 + PGA1_c07250 0.55 +0.2 746,334 - PGA1_c07250 0.56 +0.3 746,355 + PGA1_c07250 0.57 +1.4 746,370 + PGA1_c07250 0.58 +0.7 746,400 + PGA1_c07250 0.60 -1.3 746,402 + PGA1_c07250 0.60 -1.4 746,410 + PGA1_c07250 0.60 +0.2 746,426 - PGA1_c07250 0.61 +0.2 746,468 + PGA1_c07250 0.63 +1.3 746,487 - PGA1_c07250 0.64 -2.8 746,489 + PGA1_c07250 0.64 -0.7 746,504 + PGA1_c07250 0.65 +1.2 746,506 - PGA1_c07250 0.65 +0.4 746,512 - PGA1_c07250 0.66 +0.0 746,512 - PGA1_c07250 0.66 -1.5 746,555 + PGA1_c07250 0.68 -1.2 746,563 + PGA1_c07250 0.68 +1.4 746,571 - PGA1_c07250 0.69 +0.3 746,576 - PGA1_c07250 0.69 +0.8 746,709 - PGA1_c07250 0.76 +0.7 746,709 - PGA1_c07250 0.76 +0.3 746,829 + PGA1_c07250 0.83 +0.6 746,829 + PGA1_c07250 0.83 +1.7 746,829 + PGA1_c07250 0.83 -0.2 746,829 + PGA1_c07250 0.83 -2.0 746,837 - PGA1_c07250 0.83 -0.1 746,837 - PGA1_c07250 0.83 -0.3 746,844 + PGA1_c07250 0.83 -0.9 746,852 + PGA1_c07250 0.84 +0.0 746,875 - PGA1_c07250 0.85 -2.4 746,937 + PGA1_c07250 0.88 -0.3 746,937 - PGA1_c07250 0.88 +0.1 747,035 + -0.3 747,078 - -2.6 747,079 + -1.1 747,087 - +1.8 747,167 + +0.4 747,169 - -1.8 747,276 - +1.7 747,356 + PGA1_c07260 0.15 -1.5 747,363 + PGA1_c07260 0.16 +0.1 747,461 - PGA1_c07260 0.24 -0.3 747,492 - PGA1_c07260 0.26 -1.5 747,554 + PGA1_c07260 0.32 -0.6 747,557 - PGA1_c07260 0.32 +0.4 747,642 - PGA1_c07260 0.39 +2.3 747,670 + PGA1_c07260 0.41 -2.5 747,679 - PGA1_c07260 0.42 -0.4 747,706 + PGA1_c07260 0.44 -0.3 747,724 - PGA1_c07260 0.46 -0.6 747,803 - PGA1_c07260 0.52 +1.9 747,804 - PGA1_c07260 0.52 -1.9 747,804 - PGA1_c07260 0.52 -0.3 747,806 + PGA1_c07260 0.52 +0.1 747,812 + PGA1_c07260 0.53 +0.7 747,898 + PGA1_c07260 0.60 +1.7 747,898 + PGA1_c07260 0.60 -1.4 747,906 - PGA1_c07260 0.61 +0.8 747,906 - PGA1_c07260 0.61 +0.9 747,906 - PGA1_c07260 0.61 -1.2 747,945 - PGA1_c07260 0.64 +0.5 747,947 + PGA1_c07260 0.64 -0.1 748,052 + PGA1_c07260 0.73 -0.9 748,090 - PGA1_c07260 0.76 +0.2 748,101 + PGA1_c07260 0.77 +0.7 748,109 - PGA1_c07260 0.78 -0.4 748,139 - PGA1_c07260 0.80 +0.6 748,147 + PGA1_c07260 0.81 +0.4
Or see this region's nucleotide sequence