Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05440

Experiment: m.b. Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05430 and PGA1_c05440 overlap by 4 nucleotidesPGA1_c05440 and PGA1_c05450 are separated by 147 nucleotides PGA1_c05430: PGA1_c05430 - Uncharacterized protein conserved in bacteria, at 550,843 to 554,508 _c05430 PGA1_c05440: PGA1_c05440 - surface antigen-like protein, at 554,505 to 556,448 _c05440 PGA1_c05450: PGA1_c05450 - Predicted membrane protein, at 556,596 to 557,828 _c05450 Position (kb) 554 555 556 557Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 553.522 kb on + strand, within PGA1_c05430at 553.546 kb on + strand, within PGA1_c05430at 553.660 kb on + strand, within PGA1_c05430at 553.788 kb on - strand, within PGA1_c05430at 553.819 kb on + strand, within PGA1_c05430at 553.927 kb on - strand, within PGA1_c05430at 553.980 kb on + strand, within PGA1_c05430at 553.999 kb on + strand, within PGA1_c05430at 554.007 kb on - strand, within PGA1_c05430at 554.111 kb on - strand, within PGA1_c05430at 554.116 kb on - strand, within PGA1_c05430at 554.116 kb on - strand, within PGA1_c05430at 554.227 kb on - strandat 554.252 kb on - strandat 554.256 kb on + strandat 554.318 kb on + strandat 554.326 kb on - strandat 554.328 kb on - strandat 554.390 kb on + strandat 554.407 kb on + strandat 554.430 kb on + strandat 554.452 kb on + strandat 554.470 kb on - strandat 554.571 kb on + strandat 554.608 kb on + strandat 554.618 kb on + strandat 554.707 kb on - strand, within PGA1_c05440at 554.735 kb on - strand, within PGA1_c05440at 554.737 kb on + strand, within PGA1_c05440at 554.773 kb on - strand, within PGA1_c05440at 554.773 kb on - strand, within PGA1_c05440at 554.839 kb on + strand, within PGA1_c05440at 554.871 kb on - strand, within PGA1_c05440at 554.982 kb on - strand, within PGA1_c05440at 555.011 kb on - strand, within PGA1_c05440at 555.209 kb on + strand, within PGA1_c05440at 555.209 kb on + strand, within PGA1_c05440at 555.231 kb on - strand, within PGA1_c05440at 555.237 kb on + strand, within PGA1_c05440at 555.290 kb on - strand, within PGA1_c05440at 555.415 kb on - strand, within PGA1_c05440at 555.430 kb on - strand, within PGA1_c05440at 555.430 kb on - strand, within PGA1_c05440at 555.508 kb on - strand, within PGA1_c05440at 555.508 kb on - strand, within PGA1_c05440at 555.606 kb on + strand, within PGA1_c05440at 555.672 kb on - strand, within PGA1_c05440at 555.675 kb on + strand, within PGA1_c05440at 555.780 kb on - strand, within PGA1_c05440at 555.784 kb on + strand, within PGA1_c05440at 555.791 kb on + strand, within PGA1_c05440at 555.842 kb on + strand, within PGA1_c05440at 555.870 kb on + strand, within PGA1_c05440at 556.035 kb on + strand, within PGA1_c05440at 556.083 kb on - strand, within PGA1_c05440at 556.093 kb on - strand, within PGA1_c05440at 556.145 kb on - strand, within PGA1_c05440at 556.338 kb on - strandat 556.355 kb on + strandat 556.356 kb on + strandat 556.428 kb on - strandat 556.441 kb on - strandat 556.441 kb on - strandat 556.445 kb on + strandat 556.445 kb on + strandat 556.469 kb on + strandat 556.477 kb on - strandat 556.594 kb on + strandat 556.599 kb on + strandat 556.602 kb on - strandat 556.602 kb on - strandat 556.704 kb on + strandat 556.707 kb on - strandat 556.712 kb on - strandat 556.755 kb on + strand, within PGA1_c05450at 556.756 kb on - strand, within PGA1_c05450at 556.787 kb on + strand, within PGA1_c05450at 556.804 kb on + strand, within PGA1_c05450at 556.812 kb on - strand, within PGA1_c05450at 556.838 kb on + strand, within PGA1_c05450at 556.846 kb on + strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.846 kb on - strand, within PGA1_c05450at 556.860 kb on - strand, within PGA1_c05450at 556.876 kb on - strand, within PGA1_c05450at 556.876 kb on - strand, within PGA1_c05450at 556.881 kb on - strand, within PGA1_c05450at 556.916 kb on + strand, within PGA1_c05450at 556.936 kb on - strand, within PGA1_c05450at 556.956 kb on - strand, within PGA1_c05450at 557.020 kb on - strand, within PGA1_c05450at 557.078 kb on - strand, within PGA1_c05450at 557.132 kb on + strand, within PGA1_c05450at 557.255 kb on + strand, within PGA1_c05450at 557.271 kb on - strand, within PGA1_c05450at 557.285 kb on - strand, within PGA1_c05450at 557.314 kb on + strand, within PGA1_c05450at 557.340 kb on - strand, within PGA1_c05450at 557.378 kb on - strand, within PGA1_c05450at 557.396 kb on + strand, within PGA1_c05450at 557.419 kb on - strand, within PGA1_c05450

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
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553,522 + PGA1_c05430 0.73 -1.0
553,546 + PGA1_c05430 0.74 -1.3
553,660 + PGA1_c05430 0.77 -1.9
553,788 - PGA1_c05430 0.80 -2.7
553,819 + PGA1_c05430 0.81 -1.3
553,927 - PGA1_c05430 0.84 -2.3
553,980 + PGA1_c05430 0.86 -1.9
553,999 + PGA1_c05430 0.86 -0.7
554,007 - PGA1_c05430 0.86 -1.3
554,111 - PGA1_c05430 0.89 -0.6
554,116 - PGA1_c05430 0.89 -0.3
554,116 - PGA1_c05430 0.89 -2.5
554,227 - -1.2
554,252 - -2.7
554,256 + +0.3
554,318 + -1.0
554,326 - -3.3
554,328 - -4.2
554,390 + +1.2
554,407 + -0.4
554,430 + -1.9
554,452 + +0.2
554,470 - -2.3
554,571 + -2.4
554,608 + -0.9
554,618 + -1.3
554,707 - PGA1_c05440 0.10 -1.0
554,735 - PGA1_c05440 0.12 -0.8
554,737 + PGA1_c05440 0.12 +0.1
554,773 - PGA1_c05440 0.14 -0.9
554,773 - PGA1_c05440 0.14 -1.6
554,839 + PGA1_c05440 0.17 -1.9
554,871 - PGA1_c05440 0.19 -2.9
554,982 - PGA1_c05440 0.25 -0.9
555,011 - PGA1_c05440 0.26 -0.7
555,209 + PGA1_c05440 0.36 -1.9
555,209 + PGA1_c05440 0.36 -0.2
555,231 - PGA1_c05440 0.37 -2.1
555,237 + PGA1_c05440 0.38 -0.9
555,290 - PGA1_c05440 0.40 -0.5
555,415 - PGA1_c05440 0.47 -1.5
555,430 - PGA1_c05440 0.48 -0.9
555,430 - PGA1_c05440 0.48 -2.1
555,508 - PGA1_c05440 0.52 -1.7
555,508 - PGA1_c05440 0.52 -1.9
555,606 + PGA1_c05440 0.57 -1.6
555,672 - PGA1_c05440 0.60 -2.0
555,675 + PGA1_c05440 0.60 -2.2
555,780 - PGA1_c05440 0.66 -2.3
555,784 + PGA1_c05440 0.66 -1.3
555,791 + PGA1_c05440 0.66 -2.3
555,842 + PGA1_c05440 0.69 -2.4
555,870 + PGA1_c05440 0.70 +0.2
556,035 + PGA1_c05440 0.79 -0.0
556,083 - PGA1_c05440 0.81 -1.3
556,093 - PGA1_c05440 0.82 -0.0
556,145 - PGA1_c05440 0.84 +0.1
556,338 - -1.3
556,355 + -2.0
556,356 + +0.9
556,428 - -1.9
556,441 - -2.8
556,441 - -0.4
556,445 + -0.1
556,445 + -2.6
556,469 + -0.1
556,477 - +0.9
556,594 + +1.1
556,599 + +0.4
556,602 - -0.6
556,602 - +0.7
556,704 + +0.6
556,707 - -1.3
556,712 - -0.9
556,755 + PGA1_c05450 0.13 +0.0
556,756 - PGA1_c05450 0.13 -0.5
556,787 + PGA1_c05450 0.15 -0.6
556,804 + PGA1_c05450 0.17 -0.6
556,812 - PGA1_c05450 0.18 -2.3
556,838 + PGA1_c05450 0.20 +0.3
556,846 + PGA1_c05450 0.20 -0.3
556,846 - PGA1_c05450 0.20 +0.5
556,846 - PGA1_c05450 0.20 -0.3
556,846 - PGA1_c05450 0.20 +0.1
556,846 - PGA1_c05450 0.20 -1.1
556,846 - PGA1_c05450 0.20 -0.1
556,860 - PGA1_c05450 0.21 -0.3
556,876 - PGA1_c05450 0.23 +0.3
556,876 - PGA1_c05450 0.23 -2.4
556,881 - PGA1_c05450 0.23 +0.5
556,916 + PGA1_c05450 0.26 -0.4
556,936 - PGA1_c05450 0.28 -2.1
556,956 - PGA1_c05450 0.29 -0.1
557,020 - PGA1_c05450 0.34 -0.9
557,078 - PGA1_c05450 0.39 -1.4
557,132 + PGA1_c05450 0.43 -1.0
557,255 + PGA1_c05450 0.53 +1.1
557,271 - PGA1_c05450 0.55 -0.9
557,285 - PGA1_c05450 0.56 +3.3
557,314 + PGA1_c05450 0.58 -0.4
557,340 - PGA1_c05450 0.60 -0.8
557,378 - PGA1_c05450 0.63 +0.2
557,396 + PGA1_c05450 0.65 +0.4
557,419 - PGA1_c05450 0.67 +0.3

Or see this region's nucleotide sequence