Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05360

Experiment: m.b. Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05350 and PGA1_c05360 overlap by 4 nucleotidesPGA1_c05360 and PGA1_c05370 overlap by 4 nucleotides PGA1_c05350: PGA1_c05350 - dimodular nonribosomal peptide synthetase, at 532,753 to 537,387 _c05350 PGA1_c05360: PGA1_c05360 - putative glycosyl transferase, at 537,384 to 538,454 _c05360 PGA1_c05370: PGA1_c05370 - polyketide synthase, at 538,451 to 544,939 _c05370 Position (kb) 537 538 539Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 536.428 kb on - strand, within PGA1_c05350at 536.557 kb on + strand, within PGA1_c05350at 536.643 kb on - strand, within PGA1_c05350at 536.669 kb on + strand, within PGA1_c05350at 536.669 kb on + strand, within PGA1_c05350at 536.731 kb on - strand, within PGA1_c05350at 536.751 kb on + strand, within PGA1_c05350at 536.825 kb on + strand, within PGA1_c05350at 536.877 kb on + strand, within PGA1_c05350at 536.923 kb on + strand, within PGA1_c05350at 536.938 kb on + strandat 536.963 kb on + strandat 537.012 kb on + strandat 537.020 kb on - strandat 537.041 kb on + strandat 537.062 kb on + strandat 537.062 kb on + strandat 537.081 kb on - strandat 537.086 kb on - strandat 537.087 kb on - strandat 537.101 kb on - strandat 537.230 kb on + strandat 537.241 kb on + strandat 537.250 kb on - strandat 537.366 kb on + strandat 537.381 kb on - strandat 537.395 kb on + strandat 537.470 kb on - strandat 537.519 kb on - strand, within PGA1_c05360at 537.524 kb on + strand, within PGA1_c05360at 537.538 kb on + strand, within PGA1_c05360at 537.538 kb on + strand, within PGA1_c05360at 537.593 kb on + strand, within PGA1_c05360at 537.636 kb on + strand, within PGA1_c05360at 537.644 kb on - strand, within PGA1_c05360at 537.687 kb on - strand, within PGA1_c05360at 537.718 kb on - strand, within PGA1_c05360at 537.720 kb on + strand, within PGA1_c05360at 537.742 kb on + strand, within PGA1_c05360at 537.742 kb on + strand, within PGA1_c05360at 537.750 kb on - strand, within PGA1_c05360at 537.785 kb on + strand, within PGA1_c05360at 537.793 kb on - strand, within PGA1_c05360at 537.844 kb on + strand, within PGA1_c05360at 537.857 kb on + strand, within PGA1_c05360at 537.868 kb on + strand, within PGA1_c05360at 537.919 kb on - strand, within PGA1_c05360at 538.004 kb on + strand, within PGA1_c05360at 538.012 kb on - strand, within PGA1_c05360at 538.012 kb on - strand, within PGA1_c05360at 538.012 kb on - strand, within PGA1_c05360at 538.027 kb on - strand, within PGA1_c05360at 538.027 kb on - strand, within PGA1_c05360at 538.074 kb on - strand, within PGA1_c05360at 538.093 kb on - strand, within PGA1_c05360at 538.102 kb on + strand, within PGA1_c05360at 538.141 kb on - strand, within PGA1_c05360at 538.209 kb on + strand, within PGA1_c05360at 538.237 kb on + strand, within PGA1_c05360at 538.297 kb on - strand, within PGA1_c05360at 538.315 kb on - strand, within PGA1_c05360at 538.333 kb on + strand, within PGA1_c05360at 538.338 kb on + strand, within PGA1_c05360at 538.341 kb on - strand, within PGA1_c05360at 538.347 kb on + strand, within PGA1_c05360at 538.355 kb on + strandat 538.410 kb on + strandat 538.414 kb on + strandat 538.483 kb on + strandat 538.560 kb on - strandat 538.571 kb on + strandat 538.596 kb on - strandat 538.596 kb on - strandat 538.596 kb on - strandat 538.596 kb on - strandat 538.610 kb on + strandat 538.611 kb on + strandat 538.719 kb on + strandat 538.719 kb on + strandat 538.719 kb on + strandat 538.727 kb on - strandat 538.727 kb on - strandat 538.732 kb on + strandat 538.740 kb on - strandat 538.755 kb on + strandat 538.781 kb on + strandat 539.056 kb on + strandat 539.071 kb on + strandat 539.175 kb on + strand, within PGA1_c05370at 539.293 kb on + strand, within PGA1_c05370at 539.320 kb on + strand, within PGA1_c05370at 539.339 kb on + strand, within PGA1_c05370at 539.379 kb on + strand, within PGA1_c05370at 539.389 kb on + strand, within PGA1_c05370at 539.412 kb on + strand, within PGA1_c05370at 539.422 kb on + strand, within PGA1_c05370at 539.451 kb on - strand, within PGA1_c05370

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
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536,428 - PGA1_c05350 0.79 +0.7
536,557 + PGA1_c05350 0.82 +1.7
536,643 - PGA1_c05350 0.84 +1.1
536,669 + PGA1_c05350 0.84 +0.9
536,669 + PGA1_c05350 0.84 +1.4
536,731 - PGA1_c05350 0.86 +1.0
536,751 + PGA1_c05350 0.86 +0.2
536,825 + PGA1_c05350 0.88 +1.2
536,877 + PGA1_c05350 0.89 +0.2
536,923 + PGA1_c05350 0.90 +0.4
536,938 + -1.0
536,963 + -0.1
537,012 + -0.7
537,020 - -0.4
537,041 + +1.1
537,062 + +0.8
537,062 + -0.1
537,081 - +0.4
537,086 - +1.2
537,087 - +0.7
537,101 - -1.4
537,230 + +0.2
537,241 + -0.3
537,250 - -1.2
537,366 + +1.2
537,381 - -3.1
537,395 + +0.6
537,470 - -0.2
537,519 - PGA1_c05360 0.13 +0.1
537,524 + PGA1_c05360 0.13 +0.4
537,538 + PGA1_c05360 0.14 +2.1
537,538 + PGA1_c05360 0.14 +1.1
537,593 + PGA1_c05360 0.20 -0.5
537,636 + PGA1_c05360 0.24 +0.3
537,644 - PGA1_c05360 0.24 +1.1
537,687 - PGA1_c05360 0.28 -0.8
537,718 - PGA1_c05360 0.31 +1.1
537,720 + PGA1_c05360 0.31 +0.8
537,742 + PGA1_c05360 0.33 -0.2
537,742 + PGA1_c05360 0.33 +0.4
537,750 - PGA1_c05360 0.34 -1.3
537,785 + PGA1_c05360 0.37 +0.7
537,793 - PGA1_c05360 0.38 -1.3
537,844 + PGA1_c05360 0.43 +0.1
537,857 + PGA1_c05360 0.44 -0.9
537,868 + PGA1_c05360 0.45 -0.7
537,919 - PGA1_c05360 0.50 +2.4
538,004 + PGA1_c05360 0.58 -1.3
538,012 - PGA1_c05360 0.59 +0.2
538,012 - PGA1_c05360 0.59 +0.3
538,012 - PGA1_c05360 0.59 +1.3
538,027 - PGA1_c05360 0.60 -0.3
538,027 - PGA1_c05360 0.60 +1.1
538,074 - PGA1_c05360 0.64 +0.6
538,093 - PGA1_c05360 0.66 +1.3
538,102 + PGA1_c05360 0.67 +1.0
538,141 - PGA1_c05360 0.71 +0.7
538,209 + PGA1_c05360 0.77 +1.5
538,237 + PGA1_c05360 0.80 +1.6
538,297 - PGA1_c05360 0.85 +0.7
538,315 - PGA1_c05360 0.87 +0.7
538,333 + PGA1_c05360 0.89 -0.6
538,338 + PGA1_c05360 0.89 +0.1
538,341 - PGA1_c05360 0.89 +1.2
538,347 + PGA1_c05360 0.90 +0.3
538,355 + +1.3
538,410 + -0.6
538,414 + -0.3
538,483 + +0.1
538,560 - -0.3
538,571 + +0.3
538,596 - -0.9
538,596 - +0.8
538,596 - -0.2
538,596 - -0.1
538,610 + +2.2
538,611 + +0.1
538,719 + +0.1
538,719 + +0.2
538,719 + +0.4
538,727 - +0.6
538,727 - -0.8
538,732 + -0.4
538,740 - +0.4
538,755 + +0.7
538,781 + -1.6
539,056 + +1.3
539,071 + +0.4
539,175 + PGA1_c05370 0.11 +0.7
539,293 + PGA1_c05370 0.13 +0.9
539,320 + PGA1_c05370 0.13 +0.7
539,339 + PGA1_c05370 0.14 +0.7
539,379 + PGA1_c05370 0.14 -0.9
539,389 + PGA1_c05370 0.14 +0.1
539,412 + PGA1_c05370 0.15 -1.6
539,422 + PGA1_c05370 0.15 +1.2
539,451 - PGA1_c05370 0.15 +0.5

Or see this region's nucleotide sequence