Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04330 and PGA1_c04340 are separated by 0 nucleotides PGA1_c04340 and PGA1_c04350 overlap by 4 nucleotides PGA1_c04350 and PGA1_c04360 overlap by 4 nucleotides PGA1_c04360 and PGA1_c04370 overlap by 4 nucleotides
PGA1_c04330: PGA1_c04330 - hypothetical protein, at 418,663 to 419,142
_c04330
PGA1_c04340: PGA1_c04340 - hypothetical protein, at 419,143 to 419,901
_c04340
PGA1_c04350: PGA1_c04350 - putative glycosyltransferase protein, at 419,898 to 421,040
_c04350
PGA1_c04360: PGA1_c04360 - putative phosphoglycerate mutase family protein, at 421,037 to 421,627
_c04360
PGA1_c04370: PGA1_c04370 - putative glycosyltransferase protein, at 421,624 to 422,658
_c04370
Position (kb) 419
420
421
422 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 418.911 kb on - strand, within PGA1_c04330 at 418.948 kb on - strand, within PGA1_c04330 at 419.007 kb on + strand, within PGA1_c04330 at 419.010 kb on + strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.015 kb on - strand, within PGA1_c04330 at 419.061 kb on + strand, within PGA1_c04330 at 419.070 kb on - strand, within PGA1_c04330 at 419.081 kb on + strand, within PGA1_c04330 at 419.089 kb on - strand, within PGA1_c04330 at 419.116 kb on - strand at 419.176 kb on + strand at 419.176 kb on + strand at 419.188 kb on - strand at 419.244 kb on + strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.395 kb on - strand, within PGA1_c04340 at 419.453 kb on + strand, within PGA1_c04340 at 419.490 kb on + strand, within PGA1_c04340 at 419.524 kb on - strand, within PGA1_c04340 at 419.557 kb on + strand, within PGA1_c04340 at 419.631 kb on - strand, within PGA1_c04340 at 419.839 kb on + strand at 419.883 kb on - strand at 419.883 kb on - strand at 419.892 kb on - strand at 419.927 kb on - strand at 419.927 kb on - strand at 419.930 kb on + strand at 420.000 kb on + strand at 420.008 kb on - strand at 420.068 kb on + strand, within PGA1_c04350 at 420.068 kb on + strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.076 kb on - strand, within PGA1_c04350 at 420.156 kb on + strand, within PGA1_c04350 at 420.237 kb on + strand, within PGA1_c04350 at 420.259 kb on - strand, within PGA1_c04350 at 420.261 kb on - strand, within PGA1_c04350 at 420.276 kb on - strand, within PGA1_c04350 at 420.324 kb on + strand, within PGA1_c04350 at 420.378 kb on + strand, within PGA1_c04350 at 420.435 kb on - strand, within PGA1_c04350 at 420.558 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.665 kb on + strand, within PGA1_c04350 at 420.678 kb on + strand, within PGA1_c04350 at 420.701 kb on + strand, within PGA1_c04350 at 420.701 kb on + strand, within PGA1_c04350 at 420.701 kb on + strand, within PGA1_c04350 at 420.719 kb on - strand, within PGA1_c04350 at 420.746 kb on - strand, within PGA1_c04350 at 420.775 kb on - strand, within PGA1_c04350 at 420.775 kb on - strand, within PGA1_c04350 at 420.780 kb on - strand, within PGA1_c04350 at 420.780 kb on - strand, within PGA1_c04350 at 420.782 kb on + strand, within PGA1_c04350 at 420.804 kb on + strand, within PGA1_c04350 at 420.812 kb on - strand, within PGA1_c04350 at 420.895 kb on - strand, within PGA1_c04350 at 420.902 kb on + strand, within PGA1_c04350 at 420.910 kb on - strand, within PGA1_c04350 at 420.910 kb on - strand, within PGA1_c04350 at 420.910 kb on - strand, within PGA1_c04350 at 420.922 kb on - strand, within PGA1_c04350 at 420.940 kb on - strand at 420.977 kb on + strand at 420.990 kb on + strand at 420.993 kb on + strand at 420.998 kb on + strand at 420.998 kb on + strand at 421.003 kb on + strand at 421.144 kb on + strand, within PGA1_c04360 at 421.215 kb on + strand, within PGA1_c04360 at 421.243 kb on + strand, within PGA1_c04360 at 421.297 kb on - strand, within PGA1_c04360 at 421.313 kb on + strand, within PGA1_c04360 at 421.321 kb on - strand, within PGA1_c04360 at 421.355 kb on - strand, within PGA1_c04360 at 421.355 kb on - strand, within PGA1_c04360 at 421.362 kb on - strand, within PGA1_c04360 at 421.372 kb on + strand, within PGA1_c04360 at 421.377 kb on - strand, within PGA1_c04360 at 421.377 kb on - strand, within PGA1_c04360 at 421.380 kb on - strand, within PGA1_c04360 at 421.391 kb on - strand, within PGA1_c04360 at 421.468 kb on + strand, within PGA1_c04360 at 421.476 kb on - strand, within PGA1_c04360 at 421.480 kb on - strand, within PGA1_c04360 at 421.503 kb on + strand, within PGA1_c04360 at 421.534 kb on - strand, within PGA1_c04360 at 421.536 kb on + strand, within PGA1_c04360 at 421.591 kb on - strand at 421.604 kb on + strand at 421.645 kb on + strand at 421.690 kb on + strand at 421.726 kb on - strand at 421.748 kb on - strand, within PGA1_c04370 at 421.808 kb on - strand, within PGA1_c04370 at 421.819 kb on - strand, within PGA1_c04370 at 421.828 kb on + strand, within PGA1_c04370 at 421.838 kb on + strand, within PGA1_c04370 at 421.846 kb on - strand, within PGA1_c04370 at 421.848 kb on + strand, within PGA1_c04370 at 421.856 kb on - strand, within PGA1_c04370 at 421.936 kb on + strand, within PGA1_c04370 at 422.026 kb on + strand, within PGA1_c04370 at 422.039 kb on - strand, within PGA1_c04370
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 418,911 - PGA1_c04330 0.52 -0.5 418,948 - PGA1_c04330 0.59 +0.9 419,007 + PGA1_c04330 0.72 -1.0 419,010 + PGA1_c04330 0.72 -0.0 419,015 - PGA1_c04330 0.73 -0.3 419,015 - PGA1_c04330 0.73 +0.2 419,061 + PGA1_c04330 0.83 -0.2 419,070 - PGA1_c04330 0.85 +0.0 419,081 + PGA1_c04330 0.87 +0.8 419,089 - PGA1_c04330 0.89 +1.4 419,116 - +0.3 419,176 + -0.9 419,176 + -0.6 419,188 - -0.3 419,244 + PGA1_c04340 0.13 -1.8 419,395 - PGA1_c04340 0.33 -0.1 419,395 - PGA1_c04340 0.33 +0.4 419,453 + PGA1_c04340 0.41 -0.5 419,490 + PGA1_c04340 0.46 -0.9 419,524 - PGA1_c04340 0.50 -0.6 419,557 + PGA1_c04340 0.55 -1.2 419,631 - PGA1_c04340 0.64 -0.2 419,839 + -2.4 419,883 - -0.9 419,883 - -0.4 419,892 - -1.2 419,927 - -0.6 419,927 - +0.3 419,930 + +0.8 420,000 + -1.6 420,008 - -1.4 420,068 + PGA1_c04350 0.15 +0.8 420,068 + PGA1_c04350 0.15 -0.2 420,076 - PGA1_c04350 0.16 -1.2 420,076 - PGA1_c04350 0.16 -1.1 420,076 - PGA1_c04350 0.16 -0.7 420,076 - PGA1_c04350 0.16 -0.6 420,156 + PGA1_c04350 0.23 -1.2 420,237 + PGA1_c04350 0.30 -1.4 420,259 - PGA1_c04350 0.32 -2.2 420,261 - PGA1_c04350 0.32 -1.0 420,276 - PGA1_c04350 0.33 -2.9 420,324 + PGA1_c04350 0.37 -0.6 420,378 + PGA1_c04350 0.42 -0.6 420,435 - PGA1_c04350 0.47 -0.9 420,558 + PGA1_c04350 0.58 +0.1 420,665 + PGA1_c04350 0.67 -1.3 420,665 + PGA1_c04350 0.67 -1.0 420,665 + PGA1_c04350 0.67 +0.2 420,665 + PGA1_c04350 0.67 -0.0 420,678 + PGA1_c04350 0.68 -0.6 420,701 + PGA1_c04350 0.70 -0.8 420,701 + PGA1_c04350 0.70 -0.2 420,701 + PGA1_c04350 0.70 +0.8 420,719 - PGA1_c04350 0.72 -0.6 420,746 - PGA1_c04350 0.74 -2.7 420,775 - PGA1_c04350 0.77 +2.2 420,775 - PGA1_c04350 0.77 -1.2 420,780 - PGA1_c04350 0.77 +0.0 420,780 - PGA1_c04350 0.77 -0.3 420,782 + PGA1_c04350 0.77 -2.0 420,804 + PGA1_c04350 0.79 -1.4 420,812 - PGA1_c04350 0.80 -0.8 420,895 - PGA1_c04350 0.87 -2.9 420,902 + PGA1_c04350 0.88 +0.2 420,910 - PGA1_c04350 0.89 +0.1 420,910 - PGA1_c04350 0.89 -0.9 420,910 - PGA1_c04350 0.89 +0.2 420,922 - PGA1_c04350 0.90 -1.2 420,940 - -1.6 420,977 + -2.3 420,990 + -0.0 420,993 + -1.9 420,998 + -0.6 420,998 + -1.4 421,003 + -0.7 421,144 + PGA1_c04360 0.18 +0.8 421,215 + PGA1_c04360 0.30 +0.4 421,243 + PGA1_c04360 0.35 +0.4 421,297 - PGA1_c04360 0.44 -1.6 421,313 + PGA1_c04360 0.47 -0.5 421,321 - PGA1_c04360 0.48 -0.5 421,355 - PGA1_c04360 0.54 -2.0 421,355 - PGA1_c04360 0.54 -2.2 421,362 - PGA1_c04360 0.55 -2.4 421,372 + PGA1_c04360 0.57 +0.3 421,377 - PGA1_c04360 0.58 +1.0 421,377 - PGA1_c04360 0.58 -0.8 421,380 - PGA1_c04360 0.58 -0.6 421,391 - PGA1_c04360 0.60 -1.8 421,468 + PGA1_c04360 0.73 -0.3 421,476 - PGA1_c04360 0.74 -1.4 421,480 - PGA1_c04360 0.75 -0.6 421,503 + PGA1_c04360 0.79 -1.3 421,534 - PGA1_c04360 0.84 -1.6 421,536 + PGA1_c04360 0.84 -1.2 421,591 - +1.2 421,604 + -0.1 421,645 + +0.5 421,690 + -1.1 421,726 - -2.7 421,748 - PGA1_c04370 0.12 -2.6 421,808 - PGA1_c04370 0.18 +0.2 421,819 - PGA1_c04370 0.19 -2.4 421,828 + PGA1_c04370 0.20 -0.2 421,838 + PGA1_c04370 0.21 -0.5 421,846 - PGA1_c04370 0.21 -2.0 421,848 + PGA1_c04370 0.22 -1.0 421,856 - PGA1_c04370 0.22 -2.2 421,936 + PGA1_c04370 0.30 +0.8 422,026 + PGA1_c04370 0.39 -1.3 422,039 - PGA1_c04370 0.40 -0.9
Or see this region's nucleotide sequence