Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00240

Experiment: m.b. Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_65p00230 and PGA1_65p00240 are separated by 531 nucleotidesPGA1_65p00240 and PGA1_65p00250 are separated by 3 nucleotidesPGA1_65p00250 and PGA1_65p00260 are separated by 129 nucleotides PGA1_65p00230: PGA1_65p00230 - dTDP-4-dehydrorhamnose reductase RfbD, at 29,374 to 30,222 _65p00230 PGA1_65p00240: PGA1_65p00240 - dTDP-glucose 4,6-dehydratase RffG, at 30,754 to 31,806 _65p00240 PGA1_65p00250: PGA1_65p00250 - dTDP-4-dehydrorhamnose 3,5-epimerase RfbC, at 31,810 to 32,445 _65p00250 PGA1_65p00260: PGA1_65p00260 - putative metallopeptidase, at 32,575 to 34,026 _65p00260 Position (kb) 30 31 32Strain fitness (log2 ratio) -2 -1 0 1at 29.931 kb on + strand, within PGA1_65p00230at 29.991 kb on + strand, within PGA1_65p00230at 30.260 kb on - strandat 30.261 kb on - strandat 30.294 kb on - strandat 30.354 kb on - strandat 30.537 kb on - strandat 30.631 kb on + strandat 30.847 kb on + strandat 30.855 kb on - strandat 31.249 kb on - strand, within PGA1_65p00240at 31.274 kb on - strand, within PGA1_65p00240at 31.286 kb on - strand, within PGA1_65p00240at 31.298 kb on - strand, within PGA1_65p00240at 31.450 kb on - strand, within PGA1_65p00240at 31.652 kb on - strand, within PGA1_65p00240at 31.698 kb on + strand, within PGA1_65p00240at 31.969 kb on + strand, within PGA1_65p00250at 32.372 kb on + strand, within PGA1_65p00250at 32.380 kb on - strand, within PGA1_65p00250at 32.393 kb on + strandat 32.456 kb on + strandat 32.464 kb on - strandat 32.469 kb on - strandat 32.537 kb on + strandat 32.574 kb on + strandat 32.632 kb on - strandat 32.805 kb on - strand, within PGA1_65p00260

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
remove
29,931 + PGA1_65p00230 0.66 -1.8
29,991 + PGA1_65p00230 0.73 +0.3
30,260 - +1.3
30,261 - +0.3
30,294 - +0.0
30,354 - -1.2
30,537 - +0.5
30,631 + -0.7
30,847 + -0.4
30,855 - -0.1
31,249 - PGA1_65p00240 0.47 -1.2
31,274 - PGA1_65p00240 0.49 -1.7
31,286 - PGA1_65p00240 0.51 -1.5
31,298 - PGA1_65p00240 0.52 +0.9
31,450 - PGA1_65p00240 0.66 -0.1
31,652 - PGA1_65p00240 0.85 +0.9
31,698 + PGA1_65p00240 0.90 -1.2
31,969 + PGA1_65p00250 0.25 -1.0
32,372 + PGA1_65p00250 0.88 -0.2
32,380 - PGA1_65p00250 0.90 -0.4
32,393 + -0.4
32,456 + +0.8
32,464 - +1.0
32,469 - -0.7
32,537 + -0.1
32,574 + +1.0
32,632 - +0.9
32,805 - PGA1_65p00260 0.16 +0.3

Or see this region's nucleotide sequence