Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35230

Experiment: m.b. Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c35210 and PGA1_c35220 overlap by 1 nucleotidesPGA1_c35220 and PGA1_c35230 are separated by 21 nucleotidesPGA1_c35230 and PGA1_c35240 are separated by 85 nucleotides PGA1_c35210: PGA1_c35210 - putative membrane-bound lytic murein transglycosylase A, at 3,692,043 to 3,693,098 _c35210 PGA1_c35220: PGA1_c35220 - Uncharacterized protein conserved in bacteria, at 3,693,098 to 3,693,700 _c35220 PGA1_c35230: PGA1_c35230 - Uncharacterized protein conserved in bacteria, at 3,693,722 to 3,694,867 _c35230 PGA1_c35240: PGA1_c35240 - ATP-dependent hsl protease ATP-binding subunit HslU, at 3,694,953 to 3,696,263 _c35240 Position (kb) 3693 3694 3695Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3692.893 kb on - strand, within PGA1_c35210at 3693.092 kb on + strandat 3693.094 kb on + strandat 3693.100 kb on - strandat 3693.117 kb on + strandat 3693.208 kb on + strand, within PGA1_c35220at 3693.213 kb on + strand, within PGA1_c35220at 3693.247 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.258 kb on + strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.266 kb on - strand, within PGA1_c35220at 3693.279 kb on + strand, within PGA1_c35220at 3693.280 kb on + strand, within PGA1_c35220at 3693.291 kb on + strand, within PGA1_c35220at 3693.306 kb on + strand, within PGA1_c35220at 3693.338 kb on - strand, within PGA1_c35220at 3693.390 kb on - strand, within PGA1_c35220at 3693.619 kb on + strand, within PGA1_c35220at 3693.738 kb on + strandat 3693.783 kb on + strandat 3693.783 kb on + strandat 3693.783 kb on + strandat 3693.864 kb on - strand, within PGA1_c35230at 3693.895 kb on - strand, within PGA1_c35230at 3693.976 kb on + strand, within PGA1_c35230at 3693.976 kb on + strand, within PGA1_c35230at 3694.029 kb on + strand, within PGA1_c35230at 3694.047 kb on - strand, within PGA1_c35230at 3694.135 kb on - strand, within PGA1_c35230at 3694.158 kb on + strand, within PGA1_c35230at 3694.208 kb on - strand, within PGA1_c35230at 3694.288 kb on + strand, within PGA1_c35230at 3694.290 kb on - strand, within PGA1_c35230at 3694.317 kb on - strand, within PGA1_c35230at 3694.317 kb on - strand, within PGA1_c35230at 3694.370 kb on + strand, within PGA1_c35230at 3694.375 kb on + strand, within PGA1_c35230at 3694.386 kb on + strand, within PGA1_c35230at 3694.394 kb on - strand, within PGA1_c35230at 3694.422 kb on + strand, within PGA1_c35230at 3694.427 kb on + strand, within PGA1_c35230at 3694.430 kb on - strand, within PGA1_c35230at 3694.459 kb on + strand, within PGA1_c35230at 3694.459 kb on + strand, within PGA1_c35230at 3694.459 kb on + strand, within PGA1_c35230at 3694.466 kb on + strand, within PGA1_c35230at 3694.509 kb on - strand, within PGA1_c35230at 3694.509 kb on - strand, within PGA1_c35230at 3694.523 kb on - strand, within PGA1_c35230at 3694.535 kb on - strand, within PGA1_c35230at 3694.559 kb on - strand, within PGA1_c35230at 3694.599 kb on + strand, within PGA1_c35230at 3694.599 kb on + strand, within PGA1_c35230at 3694.607 kb on - strand, within PGA1_c35230at 3694.630 kb on - strand, within PGA1_c35230at 3694.723 kb on + strand, within PGA1_c35230at 3694.731 kb on - strand, within PGA1_c35230at 3694.749 kb on + strand, within PGA1_c35230at 3694.783 kb on + strandat 3694.796 kb on + strandat 3694.797 kb on - strandat 3694.823 kb on + strandat 3694.902 kb on + strandat 3694.949 kb on - strandat 3694.981 kb on + strandat 3695.093 kb on - strand, within PGA1_c35240at 3695.095 kb on - strand, within PGA1_c35240at 3695.136 kb on - strand, within PGA1_c35240at 3695.187 kb on + strand, within PGA1_c35240at 3695.198 kb on + strand, within PGA1_c35240at 3695.198 kb on + strand, within PGA1_c35240at 3695.198 kb on + strand, within PGA1_c35240at 3695.198 kb on + strand, within PGA1_c35240at 3695.198 kb on + strand, within PGA1_c35240at 3695.206 kb on - strand, within PGA1_c35240at 3695.206 kb on - strand, within PGA1_c35240at 3695.218 kb on + strand, within PGA1_c35240at 3695.218 kb on + strand, within PGA1_c35240at 3695.220 kb on + strand, within PGA1_c35240at 3695.228 kb on - strand, within PGA1_c35240at 3695.270 kb on + strand, within PGA1_c35240at 3695.313 kb on + strand, within PGA1_c35240at 3695.313 kb on + strand, within PGA1_c35240at 3695.389 kb on + strand, within PGA1_c35240at 3695.397 kb on - strand, within PGA1_c35240at 3695.397 kb on - strand, within PGA1_c35240at 3695.497 kb on + strand, within PGA1_c35240at 3695.505 kb on - strand, within PGA1_c35240at 3695.505 kb on - strand, within PGA1_c35240at 3695.505 kb on - strand, within PGA1_c35240at 3695.560 kb on + strand, within PGA1_c35240at 3695.586 kb on - strand, within PGA1_c35240at 3695.615 kb on + strand, within PGA1_c35240at 3695.617 kb on + strand, within PGA1_c35240at 3695.617 kb on + strand, within PGA1_c35240at 3695.617 kb on + strand, within PGA1_c35240at 3695.625 kb on - strand, within PGA1_c35240at 3695.691 kb on - strand, within PGA1_c35240at 3695.743 kb on + strand, within PGA1_c35240at 3695.750 kb on + strand, within PGA1_c35240at 3695.750 kb on + strand, within PGA1_c35240at 3695.750 kb on + strand, within PGA1_c35240at 3695.758 kb on - strand, within PGA1_c35240at 3695.758 kb on - strand, within PGA1_c35240at 3695.811 kb on - strand, within PGA1_c35240

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
remove
3,692,893 - PGA1_c35210 0.80 +2.0
3,693,092 + +0.6
3,693,094 + -2.4
3,693,100 - +0.4
3,693,117 + -0.3
3,693,208 + PGA1_c35220 0.18 -1.9
3,693,213 + PGA1_c35220 0.19 -0.5
3,693,247 + PGA1_c35220 0.25 +1.1
3,693,258 + PGA1_c35220 0.27 +0.7
3,693,258 + PGA1_c35220 0.27 -0.0
3,693,258 + PGA1_c35220 0.27 -0.1
3,693,258 + PGA1_c35220 0.27 -0.7
3,693,258 + PGA1_c35220 0.27 -0.4
3,693,258 + PGA1_c35220 0.27 -0.7
3,693,258 + PGA1_c35220 0.27 +1.2
3,693,258 + PGA1_c35220 0.27 +0.3
3,693,258 + PGA1_c35220 0.27 -1.8
3,693,258 + PGA1_c35220 0.27 -0.5
3,693,266 - PGA1_c35220 0.28 -0.3
3,693,266 - PGA1_c35220 0.28 +3.9
3,693,266 - PGA1_c35220 0.28 +0.2
3,693,266 - PGA1_c35220 0.28 +0.5
3,693,266 - PGA1_c35220 0.28 +0.5
3,693,266 - PGA1_c35220 0.28 +0.3
3,693,266 - PGA1_c35220 0.28 +0.5
3,693,266 - PGA1_c35220 0.28 +0.1
3,693,266 - PGA1_c35220 0.28 -1.1
3,693,266 - PGA1_c35220 0.28 +0.2
3,693,266 - PGA1_c35220 0.28 +1.0
3,693,266 - PGA1_c35220 0.28 -0.6
3,693,279 + PGA1_c35220 0.30 -0.2
3,693,280 + PGA1_c35220 0.30 +1.6
3,693,291 + PGA1_c35220 0.32 -1.1
3,693,306 + PGA1_c35220 0.34 +0.7
3,693,338 - PGA1_c35220 0.40 +1.1
3,693,390 - PGA1_c35220 0.48 -1.7
3,693,619 + PGA1_c35220 0.86 +0.4
3,693,738 + -1.1
3,693,783 + -1.1
3,693,783 + -1.1
3,693,783 + -2.4
3,693,864 - PGA1_c35230 0.12 -0.7
3,693,895 - PGA1_c35230 0.15 -1.1
3,693,976 + PGA1_c35230 0.22 +0.7
3,693,976 + PGA1_c35230 0.22 -2.4
3,694,029 + PGA1_c35230 0.27 +1.1
3,694,047 - PGA1_c35230 0.28 -0.6
3,694,135 - PGA1_c35230 0.36 -0.4
3,694,158 + PGA1_c35230 0.38 -0.8
3,694,208 - PGA1_c35230 0.42 -1.3
3,694,288 + PGA1_c35230 0.49 +0.1
3,694,290 - PGA1_c35230 0.50 -0.4
3,694,317 - PGA1_c35230 0.52 -0.6
3,694,317 - PGA1_c35230 0.52 -0.7
3,694,370 + PGA1_c35230 0.57 +0.9
3,694,375 + PGA1_c35230 0.57 +0.1
3,694,386 + PGA1_c35230 0.58 -0.7
3,694,394 - PGA1_c35230 0.59 -1.1
3,694,422 + PGA1_c35230 0.61 -0.7
3,694,427 + PGA1_c35230 0.62 -2.6
3,694,430 - PGA1_c35230 0.62 +0.3
3,694,459 + PGA1_c35230 0.64 +0.6
3,694,459 + PGA1_c35230 0.64 -1.4
3,694,459 + PGA1_c35230 0.64 -3.2
3,694,466 + PGA1_c35230 0.65 -0.9
3,694,509 - PGA1_c35230 0.69 -2.0
3,694,509 - PGA1_c35230 0.69 -1.3
3,694,523 - PGA1_c35230 0.70 +1.3
3,694,535 - PGA1_c35230 0.71 -1.9
3,694,559 - PGA1_c35230 0.73 +0.7
3,694,599 + PGA1_c35230 0.77 -1.7
3,694,599 + PGA1_c35230 0.77 -1.7
3,694,607 - PGA1_c35230 0.77 -1.4
3,694,630 - PGA1_c35230 0.79 -2.8
3,694,723 + PGA1_c35230 0.87 -1.6
3,694,731 - PGA1_c35230 0.88 -0.6
3,694,749 + PGA1_c35230 0.90 +1.9
3,694,783 + -1.9
3,694,796 + -1.3
3,694,797 - -1.1
3,694,823 + -2.1
3,694,902 + +1.1
3,694,949 - -0.1
3,694,981 + +1.3
3,695,093 - PGA1_c35240 0.11 +0.6
3,695,095 - PGA1_c35240 0.11 +0.1
3,695,136 - PGA1_c35240 0.14 +0.6
3,695,187 + PGA1_c35240 0.18 -2.4
3,695,198 + PGA1_c35240 0.19 +1.3
3,695,198 + PGA1_c35240 0.19 +0.0
3,695,198 + PGA1_c35240 0.19 -0.7
3,695,198 + PGA1_c35240 0.19 +1.0
3,695,198 + PGA1_c35240 0.19 +1.6
3,695,206 - PGA1_c35240 0.19 +0.3
3,695,206 - PGA1_c35240 0.19 -2.3
3,695,218 + PGA1_c35240 0.20 +0.9
3,695,218 + PGA1_c35240 0.20 -0.5
3,695,220 + PGA1_c35240 0.20 +0.3
3,695,228 - PGA1_c35240 0.21 -1.9
3,695,270 + PGA1_c35240 0.24 +0.4
3,695,313 + PGA1_c35240 0.27 +0.5
3,695,313 + PGA1_c35240 0.27 +2.1
3,695,389 + PGA1_c35240 0.33 +0.6
3,695,397 - PGA1_c35240 0.34 +1.9
3,695,397 - PGA1_c35240 0.34 +0.1
3,695,497 + PGA1_c35240 0.41 -1.7
3,695,505 - PGA1_c35240 0.42 +0.7
3,695,505 - PGA1_c35240 0.42 +0.4
3,695,505 - PGA1_c35240 0.42 +0.3
3,695,560 + PGA1_c35240 0.46 -0.1
3,695,586 - PGA1_c35240 0.48 +1.1
3,695,615 + PGA1_c35240 0.50 +0.9
3,695,617 + PGA1_c35240 0.51 +1.5
3,695,617 + PGA1_c35240 0.51 -1.9
3,695,617 + PGA1_c35240 0.51 +0.6
3,695,625 - PGA1_c35240 0.51 +1.4
3,695,691 - PGA1_c35240 0.56 -0.2
3,695,743 + PGA1_c35240 0.60 -0.1
3,695,750 + PGA1_c35240 0.61 +3.3
3,695,750 + PGA1_c35240 0.61 +1.2
3,695,750 + PGA1_c35240 0.61 -0.8
3,695,758 - PGA1_c35240 0.61 -0.4
3,695,758 - PGA1_c35240 0.61 +1.3
3,695,811 - PGA1_c35240 0.65 -1.1

Or see this region's nucleotide sequence