Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c33390

Experiment: m.b. Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c33380 and PGA1_c33390 are separated by 280 nucleotidesPGA1_c33390 and PGA1_c33400 are separated by 104 nucleotides PGA1_c33380: PGA1_c33380 - porin, at 3,497,140 to 3,498,081 _c33380 PGA1_c33390: PGA1_c33390 - Domain of unknown function (DUF3576)., at 3,498,362 to 3,498,850 _c33390 PGA1_c33400: PGA1_c33400 - leucyl-tRNA synthetase LeuS, at 3,498,955 to 3,501,561 _c33400 Position (kb) 3498 3499Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3498.245 kb on + strandat 3498.246 kb on - strandat 3498.246 kb on - strandat 3498.255 kb on + strandat 3498.255 kb on + strandat 3498.262 kb on + strandat 3498.262 kb on + strandat 3498.267 kb on + strandat 3498.270 kb on - strandat 3498.325 kb on - strandat 3498.528 kb on + strand, within PGA1_c33390at 3498.562 kb on + strand, within PGA1_c33390at 3498.604 kb on + strand, within PGA1_c33390at 3498.623 kb on + strand, within PGA1_c33390at 3498.641 kb on - strand, within PGA1_c33390at 3498.775 kb on - strand, within PGA1_c33390at 3498.823 kb on + strandat 3498.866 kb on + strandat 3498.874 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
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3,498,245 + -3.6
3,498,246 - -1.2
3,498,246 - +0.2
3,498,255 + +0.3
3,498,255 + -0.3
3,498,262 + +0.7
3,498,262 + -1.0
3,498,267 + -1.3
3,498,270 - -0.8
3,498,325 - -4.0
3,498,528 + PGA1_c33390 0.34 -0.2
3,498,562 + PGA1_c33390 0.41 -3.4
3,498,604 + PGA1_c33390 0.49 -3.3
3,498,623 + PGA1_c33390 0.53 -2.8
3,498,641 - PGA1_c33390 0.57 -3.3
3,498,775 - PGA1_c33390 0.84 -2.4
3,498,823 + -2.0
3,498,866 + -0.2
3,498,874 - -2.0

Or see this region's nucleotide sequence