Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24200

Experiment: m.b. Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c24190 and PGA1_c24200 are separated by 181 nucleotidesPGA1_c24200 and PGA1_c24210 are separated by 90 nucleotides PGA1_c24190: PGA1_c24190 - ATP-dependent RNA helicase HrpB, at 2,522,356 to 2,524,860 _c24190 PGA1_c24200: PGA1_c24200 - putative NUDIX hydrolase, at 2,525,042 to 2,525,500 _c24200 PGA1_c24210: PGA1_c24210 - putative phosphate transporter, at 2,525,591 to 2,527,072 _c24210 Position (kb) 2525 2526Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2524.121 kb on + strand, within PGA1_c24190at 2524.121 kb on + strand, within PGA1_c24190at 2524.121 kb on + strand, within PGA1_c24190at 2524.126 kb on - strand, within PGA1_c24190at 2524.129 kb on - strand, within PGA1_c24190at 2524.134 kb on - strand, within PGA1_c24190at 2524.152 kb on + strand, within PGA1_c24190at 2524.152 kb on + strand, within PGA1_c24190at 2524.177 kb on - strand, within PGA1_c24190at 2524.187 kb on - strand, within PGA1_c24190at 2524.226 kb on - strand, within PGA1_c24190at 2524.228 kb on - strand, within PGA1_c24190at 2524.251 kb on - strand, within PGA1_c24190at 2524.298 kb on - strand, within PGA1_c24190at 2524.298 kb on - strand, within PGA1_c24190at 2524.315 kb on - strand, within PGA1_c24190at 2524.507 kb on + strand, within PGA1_c24190at 2524.507 kb on + strand, within PGA1_c24190at 2524.515 kb on - strand, within PGA1_c24190at 2524.544 kb on - strand, within PGA1_c24190at 2524.590 kb on - strand, within PGA1_c24190at 2524.637 kb on + strandat 2524.700 kb on - strandat 2524.724 kb on + strandat 2524.732 kb on - strandat 2524.762 kb on + strandat 2524.770 kb on - strandat 2524.800 kb on + strandat 2524.800 kb on + strandat 2524.805 kb on + strandat 2524.805 kb on + strandat 2524.808 kb on - strandat 2524.868 kb on - strandat 2524.935 kb on + strandat 2524.943 kb on - strandat 2524.944 kb on + strandat 2525.024 kb on + strandat 2525.087 kb on + strandat 2525.146 kb on + strand, within PGA1_c24200at 2525.211 kb on - strand, within PGA1_c24200at 2525.226 kb on - strand, within PGA1_c24200at 2525.253 kb on + strand, within PGA1_c24200at 2525.299 kb on + strand, within PGA1_c24200at 2525.370 kb on - strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.400 kb on + strand, within PGA1_c24200at 2525.408 kb on - strand, within PGA1_c24200at 2525.408 kb on - strand, within PGA1_c24200at 2525.410 kb on + strand, within PGA1_c24200at 2525.431 kb on - strand, within PGA1_c24200at 2525.453 kb on + strand, within PGA1_c24200at 2525.713 kb on + strandat 2525.716 kb on - strandat 2525.845 kb on + strand, within PGA1_c24210at 2525.853 kb on - strand, within PGA1_c24210at 2525.878 kb on + strand, within PGA1_c24210at 2525.878 kb on + strand, within PGA1_c24210at 2525.886 kb on - strand, within PGA1_c24210at 2526.101 kb on + strand, within PGA1_c24210at 2526.341 kb on - strand, within PGA1_c24210at 2526.361 kb on - strand, within PGA1_c24210at 2526.402 kb on + strand, within PGA1_c24210at 2526.402 kb on - strand, within PGA1_c24210at 2526.405 kb on - strand, within PGA1_c24210at 2526.429 kb on - strand, within PGA1_c24210at 2526.445 kb on + strand, within PGA1_c24210at 2526.445 kb on + strand, within PGA1_c24210at 2526.465 kb on - strand, within PGA1_c24210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
remove
2,524,121 + PGA1_c24190 0.70 +1.7
2,524,121 + PGA1_c24190 0.70 +2.1
2,524,121 + PGA1_c24190 0.70 -0.5
2,524,126 - PGA1_c24190 0.71 +0.4
2,524,129 - PGA1_c24190 0.71 -0.3
2,524,134 - PGA1_c24190 0.71 -1.0
2,524,152 + PGA1_c24190 0.72 -1.7
2,524,152 + PGA1_c24190 0.72 -0.5
2,524,177 - PGA1_c24190 0.73 +3.9
2,524,187 - PGA1_c24190 0.73 +0.5
2,524,226 - PGA1_c24190 0.75 -0.6
2,524,228 - PGA1_c24190 0.75 -1.6
2,524,251 - PGA1_c24190 0.76 +1.2
2,524,298 - PGA1_c24190 0.78 +0.9
2,524,298 - PGA1_c24190 0.78 +1.7
2,524,315 - PGA1_c24190 0.78 +1.0
2,524,507 + PGA1_c24190 0.86 +1.2
2,524,507 + PGA1_c24190 0.86 +1.3
2,524,515 - PGA1_c24190 0.86 +0.2
2,524,544 - PGA1_c24190 0.87 +0.7
2,524,590 - PGA1_c24190 0.89 +0.0
2,524,637 + -1.7
2,524,700 - -1.0
2,524,724 + +0.3
2,524,732 - -0.3
2,524,762 + +0.4
2,524,770 - +0.2
2,524,800 + +0.2
2,524,800 + +1.1
2,524,805 + +0.6
2,524,805 + +0.1
2,524,808 - +0.7
2,524,868 - -0.1
2,524,935 + +0.3
2,524,943 - -3.3
2,524,944 + -0.5
2,525,024 + -2.7
2,525,087 + +0.5
2,525,146 + PGA1_c24200 0.23 -1.3
2,525,211 - PGA1_c24200 0.37 -2.5
2,525,226 - PGA1_c24200 0.40 +2.0
2,525,253 + PGA1_c24200 0.46 -0.3
2,525,299 + PGA1_c24200 0.56 -1.1
2,525,370 - PGA1_c24200 0.71 -1.5
2,525,400 + PGA1_c24200 0.78 +0.8
2,525,400 + PGA1_c24200 0.78 -2.1
2,525,400 + PGA1_c24200 0.78 -2.0
2,525,400 + PGA1_c24200 0.78 -1.3
2,525,400 + PGA1_c24200 0.78 -1.9
2,525,400 + PGA1_c24200 0.78 +1.7
2,525,400 + PGA1_c24200 0.78 -1.3
2,525,408 - PGA1_c24200 0.80 +0.2
2,525,408 - PGA1_c24200 0.80 +2.0
2,525,410 + PGA1_c24200 0.80 -0.9
2,525,431 - PGA1_c24200 0.85 +0.3
2,525,453 + PGA1_c24200 0.90 -1.7
2,525,713 + +0.4
2,525,716 - +0.2
2,525,845 + PGA1_c24210 0.17 -0.1
2,525,853 - PGA1_c24210 0.18 +0.7
2,525,878 + PGA1_c24210 0.19 +1.8
2,525,878 + PGA1_c24210 0.19 +0.8
2,525,886 - PGA1_c24210 0.20 -0.7
2,526,101 + PGA1_c24210 0.34 -2.7
2,526,341 - PGA1_c24210 0.51 +1.3
2,526,361 - PGA1_c24210 0.52 +0.7
2,526,402 + PGA1_c24210 0.55 -3.2
2,526,402 - PGA1_c24210 0.55 -1.1
2,526,405 - PGA1_c24210 0.55 +0.9
2,526,429 - PGA1_c24210 0.57 -0.1
2,526,445 + PGA1_c24210 0.58 -0.6
2,526,445 + PGA1_c24210 0.58 +0.7
2,526,465 - PGA1_c24210 0.59 +0.4

Or see this region's nucleotide sequence