Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24190 and PGA1_c24200 are separated by 181 nucleotides PGA1_c24200 and PGA1_c24210 are separated by 90 nucleotides
PGA1_c24190: PGA1_c24190 - ATP-dependent RNA helicase HrpB, at 2,522,356 to 2,524,860
_c24190
PGA1_c24200: PGA1_c24200 - putative NUDIX hydrolase, at 2,525,042 to 2,525,500
_c24200
PGA1_c24210: PGA1_c24210 - putative phosphate transporter, at 2,525,591 to 2,527,072
_c24210
Position (kb)
2525
2526 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2524.121 kb on + strand, within PGA1_c24190 at 2524.121 kb on + strand, within PGA1_c24190 at 2524.121 kb on + strand, within PGA1_c24190 at 2524.126 kb on - strand, within PGA1_c24190 at 2524.129 kb on - strand, within PGA1_c24190 at 2524.134 kb on - strand, within PGA1_c24190 at 2524.152 kb on + strand, within PGA1_c24190 at 2524.152 kb on + strand, within PGA1_c24190 at 2524.177 kb on - strand, within PGA1_c24190 at 2524.187 kb on - strand, within PGA1_c24190 at 2524.226 kb on - strand, within PGA1_c24190 at 2524.228 kb on - strand, within PGA1_c24190 at 2524.251 kb on - strand, within PGA1_c24190 at 2524.298 kb on - strand, within PGA1_c24190 at 2524.298 kb on - strand, within PGA1_c24190 at 2524.315 kb on - strand, within PGA1_c24190 at 2524.507 kb on + strand, within PGA1_c24190 at 2524.507 kb on + strand, within PGA1_c24190 at 2524.515 kb on - strand, within PGA1_c24190 at 2524.544 kb on - strand, within PGA1_c24190 at 2524.590 kb on - strand, within PGA1_c24190 at 2524.637 kb on + strand at 2524.700 kb on - strand at 2524.724 kb on + strand at 2524.732 kb on - strand at 2524.762 kb on + strand at 2524.770 kb on - strand at 2524.800 kb on + strand at 2524.800 kb on + strand at 2524.805 kb on + strand at 2524.805 kb on + strand at 2524.808 kb on - strand at 2524.868 kb on - strand at 2524.935 kb on + strand at 2524.943 kb on - strand at 2524.944 kb on + strand at 2525.024 kb on + strand at 2525.087 kb on + strand at 2525.146 kb on + strand, within PGA1_c24200 at 2525.211 kb on - strand, within PGA1_c24200 at 2525.226 kb on - strand, within PGA1_c24200 at 2525.253 kb on + strand, within PGA1_c24200 at 2525.299 kb on + strand, within PGA1_c24200 at 2525.370 kb on - strand, within PGA1_c24200 at 2525.400 kb on + strand, within PGA1_c24200 at 2525.400 kb on + strand, within PGA1_c24200 at 2525.400 kb on + strand, within PGA1_c24200 at 2525.400 kb on + strand, within PGA1_c24200 at 2525.400 kb on + strand, within PGA1_c24200 at 2525.400 kb on + strand, within PGA1_c24200 at 2525.400 kb on + strand, within PGA1_c24200 at 2525.408 kb on - strand, within PGA1_c24200 at 2525.408 kb on - strand, within PGA1_c24200 at 2525.410 kb on + strand, within PGA1_c24200 at 2525.431 kb on - strand, within PGA1_c24200 at 2525.453 kb on + strand, within PGA1_c24200 at 2525.713 kb on + strand at 2525.716 kb on - strand at 2525.845 kb on + strand, within PGA1_c24210 at 2525.853 kb on - strand, within PGA1_c24210 at 2525.878 kb on + strand, within PGA1_c24210 at 2525.878 kb on + strand, within PGA1_c24210 at 2525.886 kb on - strand, within PGA1_c24210 at 2526.101 kb on + strand, within PGA1_c24210 at 2526.341 kb on - strand, within PGA1_c24210 at 2526.361 kb on - strand, within PGA1_c24210 at 2526.402 kb on + strand, within PGA1_c24210 at 2526.402 kb on - strand, within PGA1_c24210 at 2526.405 kb on - strand, within PGA1_c24210 at 2526.429 kb on - strand, within PGA1_c24210 at 2526.445 kb on + strand, within PGA1_c24210 at 2526.445 kb on + strand, within PGA1_c24210 at 2526.465 kb on - strand, within PGA1_c24210
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 2,524,121 + PGA1_c24190 0.70 +1.7 2,524,121 + PGA1_c24190 0.70 +2.1 2,524,121 + PGA1_c24190 0.70 -0.5 2,524,126 - PGA1_c24190 0.71 +0.4 2,524,129 - PGA1_c24190 0.71 -0.3 2,524,134 - PGA1_c24190 0.71 -1.0 2,524,152 + PGA1_c24190 0.72 -1.7 2,524,152 + PGA1_c24190 0.72 -0.5 2,524,177 - PGA1_c24190 0.73 +3.9 2,524,187 - PGA1_c24190 0.73 +0.5 2,524,226 - PGA1_c24190 0.75 -0.6 2,524,228 - PGA1_c24190 0.75 -1.6 2,524,251 - PGA1_c24190 0.76 +1.2 2,524,298 - PGA1_c24190 0.78 +0.9 2,524,298 - PGA1_c24190 0.78 +1.7 2,524,315 - PGA1_c24190 0.78 +1.0 2,524,507 + PGA1_c24190 0.86 +1.2 2,524,507 + PGA1_c24190 0.86 +1.3 2,524,515 - PGA1_c24190 0.86 +0.2 2,524,544 - PGA1_c24190 0.87 +0.7 2,524,590 - PGA1_c24190 0.89 +0.0 2,524,637 + -1.7 2,524,700 - -1.0 2,524,724 + +0.3 2,524,732 - -0.3 2,524,762 + +0.4 2,524,770 - +0.2 2,524,800 + +0.2 2,524,800 + +1.1 2,524,805 + +0.6 2,524,805 + +0.1 2,524,808 - +0.7 2,524,868 - -0.1 2,524,935 + +0.3 2,524,943 - -3.3 2,524,944 + -0.5 2,525,024 + -2.7 2,525,087 + +0.5 2,525,146 + PGA1_c24200 0.23 -1.3 2,525,211 - PGA1_c24200 0.37 -2.5 2,525,226 - PGA1_c24200 0.40 +2.0 2,525,253 + PGA1_c24200 0.46 -0.3 2,525,299 + PGA1_c24200 0.56 -1.1 2,525,370 - PGA1_c24200 0.71 -1.5 2,525,400 + PGA1_c24200 0.78 +0.8 2,525,400 + PGA1_c24200 0.78 -2.1 2,525,400 + PGA1_c24200 0.78 -2.0 2,525,400 + PGA1_c24200 0.78 -1.3 2,525,400 + PGA1_c24200 0.78 -1.9 2,525,400 + PGA1_c24200 0.78 +1.7 2,525,400 + PGA1_c24200 0.78 -1.3 2,525,408 - PGA1_c24200 0.80 +0.2 2,525,408 - PGA1_c24200 0.80 +2.0 2,525,410 + PGA1_c24200 0.80 -0.9 2,525,431 - PGA1_c24200 0.85 +0.3 2,525,453 + PGA1_c24200 0.90 -1.7 2,525,713 + +0.4 2,525,716 - +0.2 2,525,845 + PGA1_c24210 0.17 -0.1 2,525,853 - PGA1_c24210 0.18 +0.7 2,525,878 + PGA1_c24210 0.19 +1.8 2,525,878 + PGA1_c24210 0.19 +0.8 2,525,886 - PGA1_c24210 0.20 -0.7 2,526,101 + PGA1_c24210 0.34 -2.7 2,526,341 - PGA1_c24210 0.51 +1.3 2,526,361 - PGA1_c24210 0.52 +0.7 2,526,402 + PGA1_c24210 0.55 -3.2 2,526,402 - PGA1_c24210 0.55 -1.1 2,526,405 - PGA1_c24210 0.55 +0.9 2,526,429 - PGA1_c24210 0.57 -0.1 2,526,445 + PGA1_c24210 0.58 -0.6 2,526,445 + PGA1_c24210 0.58 +0.7 2,526,465 - PGA1_c24210 0.59 +0.4
Or see this region's nucleotide sequence