Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24140 and PGA1_c24150 are separated by 152 nucleotides PGA1_c24150 and PGA1_c24160 are separated by 53 nucleotides PGA1_c24160 and PGA1_c24170 are separated by 112 nucleotides PGA1_c24170 and PGA1_c24180 are separated by 305 nucleotides
PGA1_c24140: PGA1_c24140 - protein-tyrosine phosphatase, at 2,518,940 to 2,519,380
_c24140
PGA1_c24150: PGA1_c24150 - Uncharacterized protein conserved in bacteria, at 2,519,533 to 2,520,003
_c24150
PGA1_c24160: PGA1_c24160 - hypothetical protein, at 2,520,057 to 2,520,482
_c24160
PGA1_c24170: PGA1_c24170 - 50S ribosomal protein L28, at 2,520,595 to 2,520,885
_c24170
PGA1_c24180: PGA1_c24180 - LAO/AO transport system kinase ArgK, at 2,521,191 to 2,522,213
_c24180
Position (kb)
2520
2521 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2519.097 kb on - strand, within PGA1_c24140 at 2519.123 kb on + strand, within PGA1_c24140 at 2519.132 kb on - strand, within PGA1_c24140 at 2519.144 kb on - strand, within PGA1_c24140 at 2519.174 kb on + strand, within PGA1_c24140 at 2519.182 kb on - strand, within PGA1_c24140 at 2519.272 kb on + strand, within PGA1_c24140 at 2519.293 kb on + strand, within PGA1_c24140 at 2519.318 kb on + strand, within PGA1_c24140 at 2519.397 kb on - strand at 2519.397 kb on - strand at 2519.399 kb on + strand at 2519.401 kb on + strand at 2519.404 kb on - strand at 2519.432 kb on + strand at 2519.432 kb on + strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.473 kb on + strand at 2519.500 kb on - strand at 2519.528 kb on + strand at 2519.534 kb on + strand at 2519.572 kb on - strand at 2519.999 kb on + strand at 2520.006 kb on + strand at 2520.054 kb on + strand at 2520.180 kb on + strand, within PGA1_c24160 at 2520.180 kb on + strand, within PGA1_c24160 at 2520.282 kb on - strand, within PGA1_c24160 at 2520.293 kb on - strand, within PGA1_c24160 at 2520.309 kb on - strand, within PGA1_c24160 at 2520.478 kb on - strand at 2520.478 kb on - strand at 2520.481 kb on + strand at 2520.493 kb on + strand at 2520.496 kb on - strand at 2520.546 kb on - strand at 2520.573 kb on - strand at 2520.573 kb on - strand at 2520.573 kb on - strand at 2520.606 kb on - strand at 2520.606 kb on - strand at 2521.019 kb on - strand at 2521.053 kb on - strand at 2521.056 kb on - strand at 2521.074 kb on - strand at 2521.102 kb on - strand at 2521.102 kb on - strand at 2521.102 kb on - strand at 2521.102 kb on - strand at 2521.198 kb on + strand at 2521.201 kb on - strand at 2521.202 kb on - strand at 2521.242 kb on - strand at 2521.261 kb on + strand at 2521.440 kb on - strand, within PGA1_c24180
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 2,519,097 - PGA1_c24140 0.36 -1.8 2,519,123 + PGA1_c24140 0.41 +1.3 2,519,132 - PGA1_c24140 0.44 -0.9 2,519,144 - PGA1_c24140 0.46 -0.3 2,519,174 + PGA1_c24140 0.53 -0.8 2,519,182 - PGA1_c24140 0.55 -0.2 2,519,272 + PGA1_c24140 0.75 +1.3 2,519,293 + PGA1_c24140 0.80 -0.5 2,519,318 + PGA1_c24140 0.86 -1.3 2,519,397 - +0.4 2,519,397 - -0.5 2,519,399 + -0.1 2,519,401 + -0.9 2,519,404 - +1.1 2,519,432 + +0.1 2,519,432 + -0.3 2,519,440 - -0.3 2,519,440 - +0.4 2,519,440 - -0.3 2,519,440 - +0.5 2,519,473 + -0.0 2,519,500 - +0.5 2,519,528 + +0.6 2,519,534 + -2.2 2,519,572 - -1.9 2,519,999 + -0.9 2,520,006 + -1.0 2,520,054 + -0.2 2,520,180 + PGA1_c24160 0.29 +2.3 2,520,180 + PGA1_c24160 0.29 -0.1 2,520,282 - PGA1_c24160 0.53 +1.4 2,520,293 - PGA1_c24160 0.55 -0.6 2,520,309 - PGA1_c24160 0.59 -0.0 2,520,478 - +1.7 2,520,478 - -0.3 2,520,481 + +0.7 2,520,493 + -0.6 2,520,496 - -1.5 2,520,546 - -0.3 2,520,573 - +0.1 2,520,573 - +0.2 2,520,573 - -1.6 2,520,606 - -1.0 2,520,606 - +0.4 2,521,019 - -2.0 2,521,053 - +1.0 2,521,056 - -0.7 2,521,074 - +1.0 2,521,102 - +0.5 2,521,102 - +1.5 2,521,102 - +4.6 2,521,102 - +1.1 2,521,198 + -0.7 2,521,201 - +0.1 2,521,202 - +0.4 2,521,242 - -3.0 2,521,261 + -0.3 2,521,440 - PGA1_c24180 0.24 +0.5
Or see this region's nucleotide sequence