Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24160

Experiment: m.b. Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24140 and PGA1_c24150 are separated by 152 nucleotidesPGA1_c24150 and PGA1_c24160 are separated by 53 nucleotidesPGA1_c24160 and PGA1_c24170 are separated by 112 nucleotidesPGA1_c24170 and PGA1_c24180 are separated by 305 nucleotides PGA1_c24140: PGA1_c24140 - protein-tyrosine phosphatase, at 2,518,940 to 2,519,380 _c24140 PGA1_c24150: PGA1_c24150 - Uncharacterized protein conserved in bacteria, at 2,519,533 to 2,520,003 _c24150 PGA1_c24160: PGA1_c24160 - hypothetical protein, at 2,520,057 to 2,520,482 _c24160 PGA1_c24170: PGA1_c24170 - 50S ribosomal protein L28, at 2,520,595 to 2,520,885 _c24170 PGA1_c24180: PGA1_c24180 - LAO/AO transport system kinase ArgK, at 2,521,191 to 2,522,213 _c24180 Position (kb) 2520 2521Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2519.097 kb on - strand, within PGA1_c24140at 2519.123 kb on + strand, within PGA1_c24140at 2519.132 kb on - strand, within PGA1_c24140at 2519.144 kb on - strand, within PGA1_c24140at 2519.174 kb on + strand, within PGA1_c24140at 2519.182 kb on - strand, within PGA1_c24140at 2519.272 kb on + strand, within PGA1_c24140at 2519.293 kb on + strand, within PGA1_c24140at 2519.318 kb on + strand, within PGA1_c24140at 2519.397 kb on - strandat 2519.397 kb on - strandat 2519.399 kb on + strandat 2519.401 kb on + strandat 2519.404 kb on - strandat 2519.432 kb on + strandat 2519.432 kb on + strandat 2519.440 kb on - strandat 2519.440 kb on - strandat 2519.440 kb on - strandat 2519.440 kb on - strandat 2519.473 kb on + strandat 2519.500 kb on - strandat 2519.528 kb on + strandat 2519.534 kb on + strandat 2519.572 kb on - strandat 2519.999 kb on + strandat 2520.006 kb on + strandat 2520.054 kb on + strandat 2520.180 kb on + strand, within PGA1_c24160at 2520.180 kb on + strand, within PGA1_c24160at 2520.282 kb on - strand, within PGA1_c24160at 2520.293 kb on - strand, within PGA1_c24160at 2520.309 kb on - strand, within PGA1_c24160at 2520.478 kb on - strandat 2520.478 kb on - strandat 2520.481 kb on + strandat 2520.493 kb on + strandat 2520.496 kb on - strandat 2520.546 kb on - strandat 2520.573 kb on - strandat 2520.573 kb on - strandat 2520.573 kb on - strandat 2520.606 kb on - strandat 2520.606 kb on - strandat 2521.019 kb on - strandat 2521.053 kb on - strandat 2521.056 kb on - strandat 2521.074 kb on - strandat 2521.102 kb on - strandat 2521.102 kb on - strandat 2521.102 kb on - strandat 2521.102 kb on - strandat 2521.198 kb on + strandat 2521.201 kb on - strandat 2521.202 kb on - strandat 2521.242 kb on - strandat 2521.261 kb on + strandat 2521.440 kb on - strand, within PGA1_c24180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
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2,519,097 - PGA1_c24140 0.36 -1.8
2,519,123 + PGA1_c24140 0.41 +1.3
2,519,132 - PGA1_c24140 0.44 -0.9
2,519,144 - PGA1_c24140 0.46 -0.3
2,519,174 + PGA1_c24140 0.53 -0.8
2,519,182 - PGA1_c24140 0.55 -0.2
2,519,272 + PGA1_c24140 0.75 +1.3
2,519,293 + PGA1_c24140 0.80 -0.5
2,519,318 + PGA1_c24140 0.86 -1.3
2,519,397 - +0.4
2,519,397 - -0.5
2,519,399 + -0.1
2,519,401 + -0.9
2,519,404 - +1.1
2,519,432 + +0.1
2,519,432 + -0.3
2,519,440 - -0.3
2,519,440 - +0.4
2,519,440 - -0.3
2,519,440 - +0.5
2,519,473 + -0.0
2,519,500 - +0.5
2,519,528 + +0.6
2,519,534 + -2.2
2,519,572 - -1.9
2,519,999 + -0.9
2,520,006 + -1.0
2,520,054 + -0.2
2,520,180 + PGA1_c24160 0.29 +2.3
2,520,180 + PGA1_c24160 0.29 -0.1
2,520,282 - PGA1_c24160 0.53 +1.4
2,520,293 - PGA1_c24160 0.55 -0.6
2,520,309 - PGA1_c24160 0.59 -0.0
2,520,478 - +1.7
2,520,478 - -0.3
2,520,481 + +0.7
2,520,493 + -0.6
2,520,496 - -1.5
2,520,546 - -0.3
2,520,573 - +0.1
2,520,573 - +0.2
2,520,573 - -1.6
2,520,606 - -1.0
2,520,606 - +0.4
2,521,019 - -2.0
2,521,053 - +1.0
2,521,056 - -0.7
2,521,074 - +1.0
2,521,102 - +0.5
2,521,102 - +1.5
2,521,102 - +4.6
2,521,102 - +1.1
2,521,198 + -0.7
2,521,201 - +0.1
2,521,202 - +0.4
2,521,242 - -3.0
2,521,261 + -0.3
2,521,440 - PGA1_c24180 0.24 +0.5

Or see this region's nucleotide sequence