Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24140

Experiment: m.b. Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c24130 and PGA1_c24140 are separated by 9 nucleotidesPGA1_c24140 and PGA1_c24150 are separated by 152 nucleotidesPGA1_c24150 and PGA1_c24160 are separated by 53 nucleotides PGA1_c24130: PGA1_c24130 - transcriptional regulator, LysR family, at 2,517,953 to 2,518,930 _c24130 PGA1_c24140: PGA1_c24140 - protein-tyrosine phosphatase, at 2,518,940 to 2,519,380 _c24140 PGA1_c24150: PGA1_c24150 - Uncharacterized protein conserved in bacteria, at 2,519,533 to 2,520,003 _c24150 PGA1_c24160: PGA1_c24160 - hypothetical protein, at 2,520,057 to 2,520,482 _c24160 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2517.945 kb on - strandat 2517.974 kb on - strandat 2517.974 kb on - strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.981 kb on + strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2517.989 kb on - strandat 2518.025 kb on - strandat 2518.037 kb on - strandat 2518.037 kb on - strandat 2518.078 kb on - strand, within PGA1_c24130at 2518.106 kb on - strand, within PGA1_c24130at 2518.168 kb on + strand, within PGA1_c24130at 2518.217 kb on - strand, within PGA1_c24130at 2518.242 kb on - strand, within PGA1_c24130at 2518.242 kb on - strand, within PGA1_c24130at 2518.306 kb on + strand, within PGA1_c24130at 2518.696 kb on - strand, within PGA1_c24130at 2518.828 kb on - strand, within PGA1_c24130at 2518.841 kb on + strandat 2518.954 kb on + strandat 2518.958 kb on - strandat 2518.984 kb on + strand, within PGA1_c24140at 2518.984 kb on + strand, within PGA1_c24140at 2518.984 kb on + strand, within PGA1_c24140at 2518.984 kb on + strand, within PGA1_c24140at 2518.984 kb on + strand, within PGA1_c24140at 2519.020 kb on + strand, within PGA1_c24140at 2519.032 kb on + strand, within PGA1_c24140at 2519.037 kb on - strand, within PGA1_c24140at 2519.044 kb on + strand, within PGA1_c24140at 2519.097 kb on - strand, within PGA1_c24140at 2519.123 kb on + strand, within PGA1_c24140at 2519.132 kb on - strand, within PGA1_c24140at 2519.144 kb on - strand, within PGA1_c24140at 2519.174 kb on + strand, within PGA1_c24140at 2519.182 kb on - strand, within PGA1_c24140at 2519.272 kb on + strand, within PGA1_c24140at 2519.293 kb on + strand, within PGA1_c24140at 2519.318 kb on + strand, within PGA1_c24140at 2519.397 kb on - strandat 2519.397 kb on - strandat 2519.399 kb on + strandat 2519.401 kb on + strandat 2519.404 kb on - strandat 2519.432 kb on + strandat 2519.432 kb on + strandat 2519.440 kb on - strandat 2519.440 kb on - strandat 2519.440 kb on - strandat 2519.440 kb on - strandat 2519.473 kb on + strandat 2519.500 kb on - strandat 2519.528 kb on + strandat 2519.534 kb on + strandat 2519.572 kb on - strandat 2519.999 kb on + strandat 2520.006 kb on + strandat 2520.054 kb on + strandat 2520.180 kb on + strand, within PGA1_c24160at 2520.180 kb on + strand, within PGA1_c24160at 2520.282 kb on - strand, within PGA1_c24160at 2520.293 kb on - strand, within PGA1_c24160at 2520.309 kb on - strand, within PGA1_c24160

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
remove
2,517,945 - -1.4
2,517,974 - -1.3
2,517,974 - -0.1
2,517,981 + -1.6
2,517,981 + -0.6
2,517,981 + -0.5
2,517,981 + +0.3
2,517,981 + +0.3
2,517,981 + +1.2
2,517,981 + -1.1
2,517,981 + -0.3
2,517,981 + -0.2
2,517,981 + -0.2
2,517,981 + -0.4
2,517,981 + -1.5
2,517,981 + -2.0
2,517,989 - -0.2
2,517,989 - -1.6
2,517,989 - +0.2
2,517,989 - -1.9
2,517,989 - -0.3
2,517,989 - -0.5
2,517,989 - -1.3
2,517,989 - -1.0
2,517,989 - -2.2
2,517,989 - -2.1
2,517,989 - -0.8
2,517,989 - -3.1
2,517,989 - +0.1
2,517,989 - -3.2
2,518,025 - -0.1
2,518,037 - -1.6
2,518,037 - -0.3
2,518,078 - PGA1_c24130 0.13 -2.9
2,518,106 - PGA1_c24130 0.16 -1.5
2,518,168 + PGA1_c24130 0.22 -0.0
2,518,217 - PGA1_c24130 0.27 -0.7
2,518,242 - PGA1_c24130 0.30 -1.3
2,518,242 - PGA1_c24130 0.30 -0.9
2,518,306 + PGA1_c24130 0.36 -2.7
2,518,696 - PGA1_c24130 0.76 -1.6
2,518,828 - PGA1_c24130 0.89 -1.0
2,518,841 + +0.5
2,518,954 + +0.1
2,518,958 - +0.5
2,518,984 + PGA1_c24140 0.10 -0.0
2,518,984 + PGA1_c24140 0.10 -1.3
2,518,984 + PGA1_c24140 0.10 -0.9
2,518,984 + PGA1_c24140 0.10 -0.3
2,518,984 + PGA1_c24140 0.10 -1.2
2,519,020 + PGA1_c24140 0.18 +0.0
2,519,032 + PGA1_c24140 0.21 -0.2
2,519,037 - PGA1_c24140 0.22 +1.1
2,519,044 + PGA1_c24140 0.24 +0.1
2,519,097 - PGA1_c24140 0.36 -1.8
2,519,123 + PGA1_c24140 0.41 +1.3
2,519,132 - PGA1_c24140 0.44 -0.9
2,519,144 - PGA1_c24140 0.46 -0.3
2,519,174 + PGA1_c24140 0.53 -0.8
2,519,182 - PGA1_c24140 0.55 -0.2
2,519,272 + PGA1_c24140 0.75 +1.3
2,519,293 + PGA1_c24140 0.80 -0.5
2,519,318 + PGA1_c24140 0.86 -1.3
2,519,397 - +0.4
2,519,397 - -0.5
2,519,399 + -0.1
2,519,401 + -0.9
2,519,404 - +1.1
2,519,432 + +0.1
2,519,432 + -0.3
2,519,440 - -0.3
2,519,440 - +0.4
2,519,440 - -0.3
2,519,440 - +0.5
2,519,473 + -0.0
2,519,500 - +0.5
2,519,528 + +0.6
2,519,534 + -2.2
2,519,572 - -1.9
2,519,999 + -0.9
2,520,006 + -1.0
2,520,054 + -0.2
2,520,180 + PGA1_c24160 0.29 +2.3
2,520,180 + PGA1_c24160 0.29 -0.1
2,520,282 - PGA1_c24160 0.53 +1.4
2,520,293 - PGA1_c24160 0.55 -0.6
2,520,309 - PGA1_c24160 0.59 -0.0

Or see this region's nucleotide sequence