Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c24130 and PGA1_c24140 are separated by 9 nucleotides PGA1_c24140 and PGA1_c24150 are separated by 152 nucleotides PGA1_c24150 and PGA1_c24160 are separated by 53 nucleotides
PGA1_c24130: PGA1_c24130 - transcriptional regulator, LysR family, at 2,517,953 to 2,518,930
_c24130
PGA1_c24140: PGA1_c24140 - protein-tyrosine phosphatase, at 2,518,940 to 2,519,380
_c24140
PGA1_c24150: PGA1_c24150 - Uncharacterized protein conserved in bacteria, at 2,519,533 to 2,520,003
_c24150
PGA1_c24160: PGA1_c24160 - hypothetical protein, at 2,520,057 to 2,520,482
_c24160
Position (kb)
2518
2519
2520 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2517.945 kb on - strand at 2517.974 kb on - strand at 2517.974 kb on - strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.981 kb on + strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2517.989 kb on - strand at 2518.025 kb on - strand at 2518.037 kb on - strand at 2518.037 kb on - strand at 2518.078 kb on - strand, within PGA1_c24130 at 2518.106 kb on - strand, within PGA1_c24130 at 2518.168 kb on + strand, within PGA1_c24130 at 2518.217 kb on - strand, within PGA1_c24130 at 2518.242 kb on - strand, within PGA1_c24130 at 2518.242 kb on - strand, within PGA1_c24130 at 2518.306 kb on + strand, within PGA1_c24130 at 2518.696 kb on - strand, within PGA1_c24130 at 2518.828 kb on - strand, within PGA1_c24130 at 2518.841 kb on + strand at 2518.954 kb on + strand at 2518.958 kb on - strand at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2518.984 kb on + strand, within PGA1_c24140 at 2519.020 kb on + strand, within PGA1_c24140 at 2519.032 kb on + strand, within PGA1_c24140 at 2519.037 kb on - strand, within PGA1_c24140 at 2519.044 kb on + strand, within PGA1_c24140 at 2519.097 kb on - strand, within PGA1_c24140 at 2519.123 kb on + strand, within PGA1_c24140 at 2519.132 kb on - strand, within PGA1_c24140 at 2519.144 kb on - strand, within PGA1_c24140 at 2519.174 kb on + strand, within PGA1_c24140 at 2519.182 kb on - strand, within PGA1_c24140 at 2519.272 kb on + strand, within PGA1_c24140 at 2519.293 kb on + strand, within PGA1_c24140 at 2519.318 kb on + strand, within PGA1_c24140 at 2519.397 kb on - strand at 2519.397 kb on - strand at 2519.399 kb on + strand at 2519.401 kb on + strand at 2519.404 kb on - strand at 2519.432 kb on + strand at 2519.432 kb on + strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.440 kb on - strand at 2519.473 kb on + strand at 2519.500 kb on - strand at 2519.528 kb on + strand at 2519.534 kb on + strand at 2519.572 kb on - strand at 2519.999 kb on + strand at 2520.006 kb on + strand at 2520.054 kb on + strand at 2520.180 kb on + strand, within PGA1_c24160 at 2520.180 kb on + strand, within PGA1_c24160 at 2520.282 kb on - strand, within PGA1_c24160 at 2520.293 kb on - strand, within PGA1_c24160 at 2520.309 kb on - strand, within PGA1_c24160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 2,517,945 - -1.4 2,517,974 - -1.3 2,517,974 - -0.1 2,517,981 + -1.6 2,517,981 + -0.6 2,517,981 + -0.5 2,517,981 + +0.3 2,517,981 + +0.3 2,517,981 + +1.2 2,517,981 + -1.1 2,517,981 + -0.3 2,517,981 + -0.2 2,517,981 + -0.2 2,517,981 + -0.4 2,517,981 + -1.5 2,517,981 + -2.0 2,517,989 - -0.2 2,517,989 - -1.6 2,517,989 - +0.2 2,517,989 - -1.9 2,517,989 - -0.3 2,517,989 - -0.5 2,517,989 - -1.3 2,517,989 - -1.0 2,517,989 - -2.2 2,517,989 - -2.1 2,517,989 - -0.8 2,517,989 - -3.1 2,517,989 - +0.1 2,517,989 - -3.2 2,518,025 - -0.1 2,518,037 - -1.6 2,518,037 - -0.3 2,518,078 - PGA1_c24130 0.13 -2.9 2,518,106 - PGA1_c24130 0.16 -1.5 2,518,168 + PGA1_c24130 0.22 -0.0 2,518,217 - PGA1_c24130 0.27 -0.7 2,518,242 - PGA1_c24130 0.30 -1.3 2,518,242 - PGA1_c24130 0.30 -0.9 2,518,306 + PGA1_c24130 0.36 -2.7 2,518,696 - PGA1_c24130 0.76 -1.6 2,518,828 - PGA1_c24130 0.89 -1.0 2,518,841 + +0.5 2,518,954 + +0.1 2,518,958 - +0.5 2,518,984 + PGA1_c24140 0.10 -0.0 2,518,984 + PGA1_c24140 0.10 -1.3 2,518,984 + PGA1_c24140 0.10 -0.9 2,518,984 + PGA1_c24140 0.10 -0.3 2,518,984 + PGA1_c24140 0.10 -1.2 2,519,020 + PGA1_c24140 0.18 +0.0 2,519,032 + PGA1_c24140 0.21 -0.2 2,519,037 - PGA1_c24140 0.22 +1.1 2,519,044 + PGA1_c24140 0.24 +0.1 2,519,097 - PGA1_c24140 0.36 -1.8 2,519,123 + PGA1_c24140 0.41 +1.3 2,519,132 - PGA1_c24140 0.44 -0.9 2,519,144 - PGA1_c24140 0.46 -0.3 2,519,174 + PGA1_c24140 0.53 -0.8 2,519,182 - PGA1_c24140 0.55 -0.2 2,519,272 + PGA1_c24140 0.75 +1.3 2,519,293 + PGA1_c24140 0.80 -0.5 2,519,318 + PGA1_c24140 0.86 -1.3 2,519,397 - +0.4 2,519,397 - -0.5 2,519,399 + -0.1 2,519,401 + -0.9 2,519,404 - +1.1 2,519,432 + +0.1 2,519,432 + -0.3 2,519,440 - -0.3 2,519,440 - +0.4 2,519,440 - -0.3 2,519,440 - +0.5 2,519,473 + -0.0 2,519,500 - +0.5 2,519,528 + +0.6 2,519,534 + -2.2 2,519,572 - -1.9 2,519,999 + -0.9 2,520,006 + -1.0 2,520,054 + -0.2 2,520,180 + PGA1_c24160 0.29 +2.3 2,520,180 + PGA1_c24160 0.29 -0.1 2,520,282 - PGA1_c24160 0.53 +1.4 2,520,293 - PGA1_c24160 0.55 -0.6 2,520,309 - PGA1_c24160 0.59 -0.0
Or see this region's nucleotide sequence