Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23660 and PGA1_c23670 are separated by 322 nucleotides PGA1_c23670 and PGA1_c23680 are separated by 42 nucleotides PGA1_c23680 and PGA1_c23690 are separated by 557 nucleotides
PGA1_c23660: PGA1_c23660 - ferredoxin, at 2,468,986 to 2,469,309
_c23660
PGA1_c23670: PGA1_c23670 - Putative peptidoglycan binding domain., at 2,469,632 to 2,470,216
_c23670
PGA1_c23680: PGA1_c23680 - putative transcriptional regulator, crp family, at 2,470,259 to 2,471,020
_c23680
PGA1_c23690: PGA1_c23690 - protease do, at 2,471,578 to 2,473,092
_c23690
Position (kb)
2470
2471
2472 Strain fitness (log2 ratio)
-2
-1
0
1 at 2469.381 kb on - strand at 2469.424 kb on - strand at 2469.472 kb on + strand at 2469.491 kb on + strand at 2469.525 kb on + strand at 2469.528 kb on - strand at 2469.663 kb on + strand at 2469.665 kb on - strand at 2469.723 kb on + strand, within PGA1_c23670 at 2469.764 kb on - strand, within PGA1_c23670 at 2469.909 kb on + strand, within PGA1_c23670 at 2470.026 kb on - strand, within PGA1_c23670 at 2470.291 kb on + strand at 2470.333 kb on - strand at 2470.362 kb on - strand, within PGA1_c23680 at 2470.455 kb on + strand, within PGA1_c23680 at 2470.463 kb on - strand, within PGA1_c23680 at 2470.463 kb on - strand, within PGA1_c23680 at 2470.524 kb on + strand, within PGA1_c23680 at 2470.534 kb on + strand, within PGA1_c23680 at 2470.534 kb on + strand, within PGA1_c23680 at 2470.542 kb on - strand, within PGA1_c23680 at 2470.542 kb on - strand, within PGA1_c23680 at 2470.542 kb on - strand, within PGA1_c23680 at 2470.780 kb on - strand, within PGA1_c23680 at 2470.994 kb on - strand at 2471.108 kb on - strand at 2471.110 kb on + strand at 2471.110 kb on + strand at 2471.110 kb on + strand at 2471.118 kb on - strand at 2471.118 kb on - strand at 2471.118 kb on - strand at 2471.132 kb on - strand at 2471.425 kb on + strand at 2471.425 kb on + strand at 2471.425 kb on + strand at 2471.500 kb on + strand at 2471.524 kb on + strand at 2471.616 kb on - strand at 2471.618 kb on - strand at 2471.657 kb on + strand at 2471.725 kb on + strand at 2471.738 kb on - strand, within PGA1_c23690 at 2471.827 kb on + strand, within PGA1_c23690 at 2471.832 kb on + strand, within PGA1_c23690 at 2471.903 kb on + strand, within PGA1_c23690 at 2471.918 kb on + strand, within PGA1_c23690 at 2472.010 kb on - strand, within PGA1_c23690
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 2,469,381 - -0.5 2,469,424 - +0.0 2,469,472 + +0.1 2,469,491 + +1.1 2,469,525 + +0.9 2,469,528 - -1.6 2,469,663 + -0.6 2,469,665 - +0.8 2,469,723 + PGA1_c23670 0.16 +0.4 2,469,764 - PGA1_c23670 0.23 +1.0 2,469,909 + PGA1_c23670 0.47 +0.5 2,470,026 - PGA1_c23670 0.67 -0.5 2,470,291 + +0.2 2,470,333 - +0.7 2,470,362 - PGA1_c23680 0.14 -2.1 2,470,455 + PGA1_c23680 0.26 -0.4 2,470,463 - PGA1_c23680 0.27 -0.8 2,470,463 - PGA1_c23680 0.27 -2.1 2,470,524 + PGA1_c23680 0.35 -2.2 2,470,534 + PGA1_c23680 0.36 -1.1 2,470,534 + PGA1_c23680 0.36 -1.3 2,470,542 - PGA1_c23680 0.37 +0.4 2,470,542 - PGA1_c23680 0.37 -2.3 2,470,542 - PGA1_c23680 0.37 -1.5 2,470,780 - PGA1_c23680 0.68 -0.3 2,470,994 - -0.9 2,471,108 - +0.3 2,471,110 + -0.2 2,471,110 + +0.0 2,471,110 + +0.7 2,471,118 - -0.1 2,471,118 - -0.1 2,471,118 - -0.3 2,471,132 - +0.4 2,471,425 + -0.7 2,471,425 + -0.7 2,471,425 + +1.4 2,471,500 + +0.7 2,471,524 + +1.4 2,471,616 - -0.6 2,471,618 - +0.4 2,471,657 + -0.3 2,471,725 + +1.5 2,471,738 - PGA1_c23690 0.11 +0.3 2,471,827 + PGA1_c23690 0.16 -0.7 2,471,832 + PGA1_c23690 0.17 +0.7 2,471,903 + PGA1_c23690 0.21 +0.1 2,471,918 + PGA1_c23690 0.22 -0.1 2,472,010 - PGA1_c23690 0.29 -2.0
Or see this region's nucleotide sequence