Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c23680

Experiment: m.b. Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c23660 and PGA1_c23670 are separated by 322 nucleotidesPGA1_c23670 and PGA1_c23680 are separated by 42 nucleotidesPGA1_c23680 and PGA1_c23690 are separated by 557 nucleotides PGA1_c23660: PGA1_c23660 - ferredoxin, at 2,468,986 to 2,469,309 _c23660 PGA1_c23670: PGA1_c23670 - Putative peptidoglycan binding domain., at 2,469,632 to 2,470,216 _c23670 PGA1_c23680: PGA1_c23680 - putative transcriptional regulator, crp family, at 2,470,259 to 2,471,020 _c23680 PGA1_c23690: PGA1_c23690 - protease do, at 2,471,578 to 2,473,092 _c23690 Position (kb) 2470 2471 2472Strain fitness (log2 ratio) -2 -1 0 1at 2469.381 kb on - strandat 2469.424 kb on - strandat 2469.472 kb on + strandat 2469.491 kb on + strandat 2469.525 kb on + strandat 2469.528 kb on - strandat 2469.663 kb on + strandat 2469.665 kb on - strandat 2469.723 kb on + strand, within PGA1_c23670at 2469.764 kb on - strand, within PGA1_c23670at 2469.909 kb on + strand, within PGA1_c23670at 2470.026 kb on - strand, within PGA1_c23670at 2470.291 kb on + strandat 2470.333 kb on - strandat 2470.362 kb on - strand, within PGA1_c23680at 2470.455 kb on + strand, within PGA1_c23680at 2470.463 kb on - strand, within PGA1_c23680at 2470.463 kb on - strand, within PGA1_c23680at 2470.524 kb on + strand, within PGA1_c23680at 2470.534 kb on + strand, within PGA1_c23680at 2470.534 kb on + strand, within PGA1_c23680at 2470.542 kb on - strand, within PGA1_c23680at 2470.542 kb on - strand, within PGA1_c23680at 2470.542 kb on - strand, within PGA1_c23680at 2470.780 kb on - strand, within PGA1_c23680at 2470.994 kb on - strandat 2471.108 kb on - strandat 2471.110 kb on + strandat 2471.110 kb on + strandat 2471.110 kb on + strandat 2471.118 kb on - strandat 2471.118 kb on - strandat 2471.118 kb on - strandat 2471.132 kb on - strandat 2471.425 kb on + strandat 2471.425 kb on + strandat 2471.425 kb on + strandat 2471.500 kb on + strandat 2471.524 kb on + strandat 2471.616 kb on - strandat 2471.618 kb on - strandat 2471.657 kb on + strandat 2471.725 kb on + strandat 2471.738 kb on - strand, within PGA1_c23690at 2471.827 kb on + strand, within PGA1_c23690at 2471.832 kb on + strand, within PGA1_c23690at 2471.903 kb on + strand, within PGA1_c23690at 2471.918 kb on + strand, within PGA1_c23690at 2472.010 kb on - strand, within PGA1_c23690

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
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2,469,381 - -0.5
2,469,424 - +0.0
2,469,472 + +0.1
2,469,491 + +1.1
2,469,525 + +0.9
2,469,528 - -1.6
2,469,663 + -0.6
2,469,665 - +0.8
2,469,723 + PGA1_c23670 0.16 +0.4
2,469,764 - PGA1_c23670 0.23 +1.0
2,469,909 + PGA1_c23670 0.47 +0.5
2,470,026 - PGA1_c23670 0.67 -0.5
2,470,291 + +0.2
2,470,333 - +0.7
2,470,362 - PGA1_c23680 0.14 -2.1
2,470,455 + PGA1_c23680 0.26 -0.4
2,470,463 - PGA1_c23680 0.27 -0.8
2,470,463 - PGA1_c23680 0.27 -2.1
2,470,524 + PGA1_c23680 0.35 -2.2
2,470,534 + PGA1_c23680 0.36 -1.1
2,470,534 + PGA1_c23680 0.36 -1.3
2,470,542 - PGA1_c23680 0.37 +0.4
2,470,542 - PGA1_c23680 0.37 -2.3
2,470,542 - PGA1_c23680 0.37 -1.5
2,470,780 - PGA1_c23680 0.68 -0.3
2,470,994 - -0.9
2,471,108 - +0.3
2,471,110 + -0.2
2,471,110 + +0.0
2,471,110 + +0.7
2,471,118 - -0.1
2,471,118 - -0.1
2,471,118 - -0.3
2,471,132 - +0.4
2,471,425 + -0.7
2,471,425 + -0.7
2,471,425 + +1.4
2,471,500 + +0.7
2,471,524 + +1.4
2,471,616 - -0.6
2,471,618 - +0.4
2,471,657 + -0.3
2,471,725 + +1.5
2,471,738 - PGA1_c23690 0.11 +0.3
2,471,827 + PGA1_c23690 0.16 -0.7
2,471,832 + PGA1_c23690 0.17 +0.7
2,471,903 + PGA1_c23690 0.21 +0.1
2,471,918 + PGA1_c23690 0.22 -0.1
2,472,010 - PGA1_c23690 0.29 -2.0

Or see this region's nucleotide sequence