Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c23530 and PGA1_c23540 are separated by 210 nucleotides PGA1_c23540 and PGA1_c23550 are separated by 301 nucleotides
PGA1_c23530: PGA1_c23530 - Uncharacterized conserved protein, at 2,453,257 to 2,454,360
_c23530
PGA1_c23540: PGA1_c23540 - O-succinylhomoserine sulfhydrylase MetZ, at 2,454,571 to 2,455,761
_c23540
PGA1_c23550: PGA1_c23550 - putative intracellular septation protein, at 2,456,063 to 2,456,677
_c23550
Position (kb)
2454
2455
2456 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2454.363 kb on - strand at 2454.418 kb on + strand at 2454.498 kb on - strand at 2454.551 kb on - strand at 2454.570 kb on - strand at 2454.582 kb on - strand at 2454.585 kb on + strand at 2454.585 kb on + strand at 2454.654 kb on + strand at 2454.654 kb on + strand at 2454.654 kb on + strand at 2454.662 kb on - strand at 2454.670 kb on - strand at 2454.677 kb on + strand at 2454.680 kb on - strand at 2454.695 kb on - strand, within PGA1_c23540 at 2454.699 kb on + strand, within PGA1_c23540 at 2454.831 kb on + strand, within PGA1_c23540 at 2454.836 kb on + strand, within PGA1_c23540 at 2454.836 kb on + strand, within PGA1_c23540 at 2454.932 kb on + strand, within PGA1_c23540 at 2454.959 kb on + strand, within PGA1_c23540 at 2454.967 kb on - strand, within PGA1_c23540 at 2454.967 kb on - strand, within PGA1_c23540 at 2455.001 kb on + strand, within PGA1_c23540 at 2455.012 kb on + strand, within PGA1_c23540 at 2455.029 kb on + strand, within PGA1_c23540 at 2455.036 kb on - strand, within PGA1_c23540 at 2455.037 kb on - strand, within PGA1_c23540 at 2455.050 kb on + strand, within PGA1_c23540 at 2455.062 kb on + strand, within PGA1_c23540 at 2455.070 kb on - strand, within PGA1_c23540 at 2455.070 kb on - strand, within PGA1_c23540 at 2455.116 kb on - strand, within PGA1_c23540 at 2455.123 kb on - strand, within PGA1_c23540 at 2455.181 kb on - strand, within PGA1_c23540 at 2455.224 kb on - strand, within PGA1_c23540 at 2455.229 kb on - strand, within PGA1_c23540 at 2455.251 kb on - strand, within PGA1_c23540 at 2455.256 kb on - strand, within PGA1_c23540 at 2455.365 kb on + strand, within PGA1_c23540 at 2455.377 kb on + strand, within PGA1_c23540 at 2455.377 kb on + strand, within PGA1_c23540 at 2455.377 kb on + strand, within PGA1_c23540 at 2455.377 kb on + strand, within PGA1_c23540 at 2455.495 kb on - strand, within PGA1_c23540 at 2455.517 kb on + strand, within PGA1_c23540 at 2455.530 kb on - strand, within PGA1_c23540 at 2455.564 kb on + strand, within PGA1_c23540 at 2455.580 kb on - strand, within PGA1_c23540 at 2455.582 kb on + strand, within PGA1_c23540 at 2455.586 kb on - strand, within PGA1_c23540 at 2455.641 kb on + strand, within PGA1_c23540 at 2455.659 kb on - strand at 2455.659 kb on - strand at 2455.693 kb on - strand at 2455.839 kb on - strand at 2455.839 kb on - strand at 2455.841 kb on - strand at 2455.862 kb on - strand at 2456.757 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 2,454,363 - -0.1 2,454,418 + -0.5 2,454,498 - +0.0 2,454,551 - +0.7 2,454,570 - +0.1 2,454,582 - -0.8 2,454,585 + -0.6 2,454,585 + -0.7 2,454,654 + -2.1 2,454,654 + -1.7 2,454,654 + -2.5 2,454,662 - -0.9 2,454,670 - -0.3 2,454,677 + -1.1 2,454,680 - -1.3 2,454,695 - PGA1_c23540 0.10 -1.4 2,454,699 + PGA1_c23540 0.11 -1.7 2,454,831 + PGA1_c23540 0.22 -0.2 2,454,836 + PGA1_c23540 0.22 -0.9 2,454,836 + PGA1_c23540 0.22 -3.0 2,454,932 + PGA1_c23540 0.30 -1.3 2,454,959 + PGA1_c23540 0.33 -0.3 2,454,967 - PGA1_c23540 0.33 +2.7 2,454,967 - PGA1_c23540 0.33 +0.1 2,455,001 + PGA1_c23540 0.36 -1.3 2,455,012 + PGA1_c23540 0.37 -1.9 2,455,029 + PGA1_c23540 0.38 -1.7 2,455,036 - PGA1_c23540 0.39 -0.3 2,455,037 - PGA1_c23540 0.39 +0.7 2,455,050 + PGA1_c23540 0.40 -0.9 2,455,062 + PGA1_c23540 0.41 -1.3 2,455,070 - PGA1_c23540 0.42 -0.3 2,455,070 - PGA1_c23540 0.42 -0.3 2,455,116 - PGA1_c23540 0.46 -3.0 2,455,123 - PGA1_c23540 0.46 -2.8 2,455,181 - PGA1_c23540 0.51 -2.1 2,455,224 - PGA1_c23540 0.55 -1.3 2,455,229 - PGA1_c23540 0.55 -0.3 2,455,251 - PGA1_c23540 0.57 -2.3 2,455,256 - PGA1_c23540 0.58 -0.9 2,455,365 + PGA1_c23540 0.67 -0.9 2,455,377 + PGA1_c23540 0.68 +0.3 2,455,377 + PGA1_c23540 0.68 -1.7 2,455,377 + PGA1_c23540 0.68 -0.3 2,455,377 + PGA1_c23540 0.68 -0.3 2,455,495 - PGA1_c23540 0.78 -0.3 2,455,517 + PGA1_c23540 0.79 +0.7 2,455,530 - PGA1_c23540 0.81 -0.9 2,455,564 + PGA1_c23540 0.83 -2.5 2,455,580 - PGA1_c23540 0.85 -2.1 2,455,582 + PGA1_c23540 0.85 -2.1 2,455,586 - PGA1_c23540 0.85 -0.3 2,455,641 + PGA1_c23540 0.90 +0.1 2,455,659 - -0.6 2,455,659 - -1.3 2,455,693 - -1.5 2,455,839 - +0.3 2,455,839 - -0.7 2,455,841 - +1.0 2,455,862 - -0.1 2,456,757 - +0.5
Or see this region's nucleotide sequence