Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02400 and PGA1_c02420 are separated by 457 nucleotides PGA1_c02420 and PGA1_c02430 are separated by 235 nucleotides
PGA1_c02400: PGA1_c02400 - putative major facilitator superfamily transporter, at 217,028 to 218,269
_c02400
PGA1_c02420: PGA1_c02420 - V8-like Glu-specific endopeptidase, at 218,727 to 219,440
_c02420
PGA1_c02430: PGA1_c02430 - type I secretion membrane fusion protein, HlyD family, at 219,676 to 220,845
_c02430
Position (kb) 218
219
220 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 217.775 kb on - strand, within PGA1_c02400 at 217.797 kb on + strand, within PGA1_c02400 at 217.797 kb on + strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.805 kb on - strand, within PGA1_c02400 at 217.822 kb on + strand, within PGA1_c02400 at 217.864 kb on + strand, within PGA1_c02400 at 217.966 kb on + strand, within PGA1_c02400 at 218.013 kb on + strand, within PGA1_c02400 at 218.065 kb on + strand, within PGA1_c02400 at 218.072 kb on + strand, within PGA1_c02400 at 218.092 kb on + strand, within PGA1_c02400 at 218.249 kb on + strand at 218.249 kb on + strand at 218.249 kb on + strand at 218.249 kb on + strand at 218.257 kb on - strand at 218.267 kb on - strand at 218.267 kb on - strand at 218.282 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.283 kb on + strand at 218.290 kb on - strand at 218.291 kb on - strand at 218.291 kb on - strand at 218.291 kb on - strand at 218.293 kb on - strand at 218.327 kb on - strand at 218.367 kb on - strand at 218.439 kb on + strand at 218.440 kb on + strand at 218.447 kb on - strand at 218.454 kb on - strand at 218.454 kb on - strand at 218.454 kb on - strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.479 kb on + strand at 218.485 kb on - strand at 218.487 kb on - strand at 218.487 kb on - strand at 218.551 kb on + strand at 218.571 kb on - strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.596 kb on + strand at 218.597 kb on + strand at 218.604 kb on - strand at 218.615 kb on - strand at 218.649 kb on + strand at 218.650 kb on - strand at 218.673 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.686 kb on + strand at 218.691 kb on + strand at 218.691 kb on + strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.694 kb on - strand at 218.698 kb on + strand at 218.698 kb on + strand at 218.699 kb on - strand at 218.699 kb on - strand at 218.706 kb on - strand at 218.706 kb on - strand at 218.707 kb on - strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.774 kb on + strand at 218.782 kb on - strand at 218.782 kb on - strand at 218.812 kb on - strand, within PGA1_c02420 at 218.835 kb on + strand, within PGA1_c02420 at 218.872 kb on - strand, within PGA1_c02420 at 218.996 kb on + strand, within PGA1_c02420 at 219.115 kb on + strand, within PGA1_c02420 at 219.115 kb on - strand, within PGA1_c02420 at 219.156 kb on - strand, within PGA1_c02420 at 219.176 kb on + strand, within PGA1_c02420 at 219.177 kb on + strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.185 kb on - strand, within PGA1_c02420 at 219.232 kb on - strand, within PGA1_c02420 at 219.269 kb on - strand, within PGA1_c02420 at 219.297 kb on + strand, within PGA1_c02420 at 219.323 kb on - strand, within PGA1_c02420 at 219.456 kb on + strand at 219.495 kb on - strand at 219.524 kb on - strand at 219.578 kb on - strand at 219.578 kb on - strand at 219.589 kb on + strand at 219.589 kb on + strand at 219.589 kb on + strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.597 kb on - strand at 219.607 kb on - strand at 219.607 kb on - strand at 219.632 kb on + strand at 219.655 kb on + strand at 219.662 kb on + strand at 219.681 kb on - strand at 219.681 kb on - strand at 219.852 kb on - strand, within PGA1_c02430 at 219.931 kb on + strand, within PGA1_c02430 at 219.937 kb on + strand, within PGA1_c02430 at 219.945 kb on - strand, within PGA1_c02430 at 219.973 kb on + strand, within PGA1_c02430 at 219.991 kb on - strand, within PGA1_c02430 at 220.006 kb on - strand, within PGA1_c02430 at 220.006 kb on - strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.221 kb on + strand, within PGA1_c02430 at 220.295 kb on + strand, within PGA1_c02430 at 220.303 kb on - strand, within PGA1_c02430 at 220.305 kb on + strand, within PGA1_c02430 at 220.337 kb on + strand, within PGA1_c02430 at 220.345 kb on - strand, within PGA1_c02430 at 220.415 kb on + strand, within PGA1_c02430 at 220.415 kb on + strand, within PGA1_c02430 at 220.423 kb on - strand, within PGA1_c02430 at 220.436 kb on + strand, within PGA1_c02430 at 220.439 kb on - strand, within PGA1_c02430 at 220.439 kb on - strand, within PGA1_c02430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 217,775 - PGA1_c02400 0.60 -2.2 217,797 + PGA1_c02400 0.62 +1.4 217,797 + PGA1_c02400 0.62 -0.0 217,805 - PGA1_c02400 0.63 -0.4 217,805 - PGA1_c02400 0.63 +0.9 217,805 - PGA1_c02400 0.63 +0.7 217,822 + PGA1_c02400 0.64 +0.4 217,864 + PGA1_c02400 0.67 -1.2 217,966 + PGA1_c02400 0.76 -1.1 218,013 + PGA1_c02400 0.79 -1.6 218,065 + PGA1_c02400 0.83 -1.2 218,072 + PGA1_c02400 0.84 -0.8 218,092 + PGA1_c02400 0.86 -1.0 218,249 + -0.9 218,249 + +0.3 218,249 + +0.6 218,249 + -0.7 218,257 - -1.5 218,267 - +0.6 218,267 - -3.0 218,282 + +0.1 218,283 + -0.1 218,283 + -0.4 218,283 + +1.6 218,290 - -2.8 218,291 - +0.2 218,291 - +0.6 218,291 - -1.3 218,293 - -0.4 218,327 - +1.3 218,367 - -3.5 218,439 + -0.1 218,440 + -0.9 218,447 - -2.0 218,454 - -2.4 218,454 - +0.4 218,454 - +0.2 218,479 + +1.6 218,479 + +0.4 218,479 + -2.1 218,479 + +1.8 218,479 + -0.4 218,479 + -0.9 218,479 + +0.8 218,479 + +0.6 218,479 + -0.2 218,479 + +0.7 218,485 - -2.4 218,487 - -0.9 218,487 - -1.4 218,551 + -1.7 218,571 - +1.8 218,596 + -0.8 218,596 + -0.9 218,596 + +1.0 218,596 + -1.0 218,597 + -0.9 218,604 - -1.6 218,615 - -1.4 218,649 + +0.1 218,650 - -1.2 218,673 + -1.2 218,686 + -0.6 218,686 + +2.1 218,686 + -0.4 218,686 + -0.8 218,686 + +1.3 218,686 + +0.2 218,686 + +0.9 218,686 + -0.0 218,686 + -2.8 218,686 + -1.4 218,686 + -0.9 218,686 + +2.3 218,686 + -0.4 218,691 + -1.5 218,691 + -0.8 218,694 - -1.1 218,694 - -0.2 218,694 - -0.3 218,694 - +0.8 218,698 + +0.2 218,698 + -0.1 218,699 - -0.2 218,699 - +1.0 218,706 - -1.8 218,706 - +0.4 218,707 - +0.0 218,774 + -2.8 218,774 + +0.4 218,774 + -1.6 218,774 + -0.5 218,774 + -0.5 218,782 - -1.8 218,782 - -0.2 218,812 - PGA1_c02420 0.12 -2.2 218,835 + PGA1_c02420 0.15 -1.3 218,872 - PGA1_c02420 0.20 -1.0 218,996 + PGA1_c02420 0.38 -0.1 219,115 + PGA1_c02420 0.54 -0.8 219,115 - PGA1_c02420 0.54 +0.3 219,156 - PGA1_c02420 0.60 +0.2 219,176 + PGA1_c02420 0.63 -1.8 219,177 + PGA1_c02420 0.63 -1.5 219,185 - PGA1_c02420 0.64 -2.3 219,185 - PGA1_c02420 0.64 -1.1 219,185 - PGA1_c02420 0.64 -2.9 219,232 - PGA1_c02420 0.71 -0.6 219,269 - PGA1_c02420 0.76 +1.0 219,297 + PGA1_c02420 0.80 -2.4 219,323 - PGA1_c02420 0.83 -0.9 219,456 + +0.9 219,495 - +0.2 219,524 - -1.1 219,578 - -0.5 219,578 - +0.1 219,589 + -2.0 219,589 + +0.3 219,589 + -0.1 219,597 - +0.3 219,597 - +1.8 219,597 - +0.6 219,597 - -2.2 219,607 - -1.6 219,607 - +1.4 219,632 + +0.4 219,655 + +0.1 219,662 + -1.2 219,681 - +0.0 219,681 - +0.8 219,852 - PGA1_c02430 0.15 +2.5 219,931 + PGA1_c02430 0.22 +2.9 219,937 + PGA1_c02430 0.22 +3.2 219,945 - PGA1_c02430 0.23 +1.9 219,973 + PGA1_c02430 0.25 +2.7 219,991 - PGA1_c02430 0.27 +2.5 220,006 - PGA1_c02430 0.28 +2.5 220,006 - PGA1_c02430 0.28 +1.3 220,221 + PGA1_c02430 0.47 +2.2 220,221 + PGA1_c02430 0.47 +1.9 220,221 + PGA1_c02430 0.47 +2.8 220,295 + PGA1_c02430 0.53 +0.8 220,303 - PGA1_c02430 0.54 +1.6 220,305 + PGA1_c02430 0.54 +2.0 220,337 + PGA1_c02430 0.56 +2.4 220,345 - PGA1_c02430 0.57 +3.2 220,415 + PGA1_c02430 0.63 +2.4 220,415 + PGA1_c02430 0.63 +3.4 220,423 - PGA1_c02430 0.64 +2.6 220,436 + PGA1_c02430 0.65 +3.3 220,439 - PGA1_c02430 0.65 +3.1 220,439 - PGA1_c02430 0.65 +2.6
Or see this region's nucleotide sequence