Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19100 and PGA1_c19110 are separated by 141 nucleotides PGA1_c19110 and PGA1_c19120 are separated by 176 nucleotides PGA1_c19120 and PGA1_c19130 are separated by 35 nucleotides PGA1_c19130 and PGA1_c19140 are separated by 177 nucleotides
PGA1_c19100: PGA1_c19100 - hypothetical protein, at 1,984,228 to 1,984,428
_c19100
PGA1_c19110: PGA1_c19110 - superoxide dismutase SodB, at 1,984,570 to 1,985,169
_c19110
PGA1_c19120: PGA1_c19120 - hypothetical protein, at 1,985,346 to 1,985,843
_c19120
PGA1_c19130: PGA1_c19130 - hypothetical protein, at 1,985,879 to 1,986,334
_c19130
PGA1_c19140: PGA1_c19140 - sarcosine oxidase-like protein, at 1,986,512 to 1,987,084
_c19140
Position (kb)
1985
1986 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1984.404 kb on + strand, within PGA1_c19100 at 1984.442 kb on + strand at 1984.467 kb on + strand at 1985.184 kb on - strand at 1985.214 kb on - strand at 1985.236 kb on + strand at 1985.239 kb on - strand at 1985.244 kb on - strand at 1985.299 kb on - strand at 1985.352 kb on - strand at 1985.488 kb on + strand, within PGA1_c19120 at 1985.520 kb on - strand, within PGA1_c19120 at 1985.526 kb on - strand, within PGA1_c19120 at 1985.568 kb on + strand, within PGA1_c19120 at 1985.589 kb on - strand, within PGA1_c19120 at 1985.639 kb on + strand, within PGA1_c19120 at 1985.665 kb on + strand, within PGA1_c19120 at 1985.670 kb on + strand, within PGA1_c19120 at 1985.730 kb on + strand, within PGA1_c19120 at 1985.757 kb on - strand, within PGA1_c19120 at 1985.775 kb on + strand, within PGA1_c19120 at 1985.783 kb on - strand, within PGA1_c19120 at 1985.817 kb on + strand at 1985.902 kb on + strand at 1985.910 kb on - strand at 1985.920 kb on + strand at 1985.952 kb on + strand, within PGA1_c19130 at 1985.958 kb on - strand, within PGA1_c19130 at 1985.975 kb on + strand, within PGA1_c19130 at 1985.983 kb on - strand, within PGA1_c19130 at 1986.040 kb on + strand, within PGA1_c19130 at 1986.040 kb on - strand, within PGA1_c19130 at 1986.107 kb on - strand, within PGA1_c19130 at 1986.111 kb on + strand, within PGA1_c19130 at 1986.136 kb on + strand, within PGA1_c19130 at 1986.191 kb on - strand, within PGA1_c19130 at 1986.225 kb on - strand, within PGA1_c19130 at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.349 kb on + strand at 1986.357 kb on - strand at 1986.357 kb on - strand at 1986.357 kb on - strand at 1986.357 kb on - strand at 1986.366 kb on + strand at 1986.418 kb on - strand at 1986.456 kb on + strand at 1986.472 kb on + strand at 1986.472 kb on + strand at 1986.472 kb on + strand at 1986.472 kb on + strand at 1986.472 kb on + strand at 1986.472 kb on + strand at 1986.472 kb on + strand at 1986.472 kb on + strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.480 kb on - strand at 1986.507 kb on - strand at 1986.517 kb on - strand at 1986.560 kb on - strand at 1986.563 kb on - strand at 1986.625 kb on - strand, within PGA1_c19140 at 1986.647 kb on - strand, within PGA1_c19140 at 1986.671 kb on - strand, within PGA1_c19140 at 1986.698 kb on + strand, within PGA1_c19140 at 1986.769 kb on + strand, within PGA1_c19140 at 1986.809 kb on - strand, within PGA1_c19140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 1,984,404 + PGA1_c19100 0.88 -0.5 1,984,442 + +1.3 1,984,467 + +1.2 1,985,184 - -1.8 1,985,214 - +1.0 1,985,236 + -1.2 1,985,239 - +0.9 1,985,244 - +0.3 1,985,299 - -0.4 1,985,352 - -0.5 1,985,488 + PGA1_c19120 0.29 -1.7 1,985,520 - PGA1_c19120 0.35 -0.4 1,985,526 - PGA1_c19120 0.36 +0.2 1,985,568 + PGA1_c19120 0.45 -1.6 1,985,589 - PGA1_c19120 0.49 -0.4 1,985,639 + PGA1_c19120 0.59 -1.0 1,985,665 + PGA1_c19120 0.64 +1.1 1,985,670 + PGA1_c19120 0.65 -1.0 1,985,730 + PGA1_c19120 0.77 +0.1 1,985,757 - PGA1_c19120 0.83 -0.6 1,985,775 + PGA1_c19120 0.86 +0.5 1,985,783 - PGA1_c19120 0.88 -1.7 1,985,817 + +0.6 1,985,902 + +0.7 1,985,910 - -1.7 1,985,920 + -0.2 1,985,952 + PGA1_c19130 0.16 -0.6 1,985,958 - PGA1_c19130 0.17 -0.8 1,985,975 + PGA1_c19130 0.21 -1.2 1,985,983 - PGA1_c19130 0.23 +0.1 1,986,040 + PGA1_c19130 0.35 +0.6 1,986,040 - PGA1_c19130 0.35 -0.5 1,986,107 - PGA1_c19130 0.50 +0.5 1,986,111 + PGA1_c19130 0.51 -0.4 1,986,136 + PGA1_c19130 0.56 -1.7 1,986,191 - PGA1_c19130 0.68 -1.0 1,986,225 - PGA1_c19130 0.76 -0.4 1,986,349 + +0.6 1,986,349 + -0.1 1,986,349 + +1.1 1,986,349 + +0.9 1,986,349 + -0.0 1,986,349 + +0.7 1,986,349 + +1.1 1,986,349 + -2.5 1,986,349 + -0.9 1,986,357 - -2.5 1,986,357 - -1.6 1,986,357 - -1.5 1,986,357 - -0.6 1,986,366 + +1.2 1,986,418 - +0.2 1,986,456 + +0.5 1,986,472 + +0.5 1,986,472 + +0.4 1,986,472 + +0.8 1,986,472 + +0.1 1,986,472 + +0.1 1,986,472 + +1.5 1,986,472 + -0.9 1,986,472 + +1.2 1,986,480 - -0.2 1,986,480 - -0.9 1,986,480 - -1.2 1,986,480 - +0.6 1,986,480 - +0.4 1,986,480 - +0.5 1,986,480 - -0.4 1,986,480 - +1.3 1,986,480 - -1.1 1,986,480 - +0.6 1,986,480 - -2.4 1,986,507 - -0.7 1,986,517 - -0.6 1,986,560 - -0.4 1,986,563 - +0.3 1,986,625 - PGA1_c19140 0.20 -0.7 1,986,647 - PGA1_c19140 0.24 +2.2 1,986,671 - PGA1_c19140 0.28 -2.4 1,986,698 + PGA1_c19140 0.32 -0.6 1,986,769 + PGA1_c19140 0.45 +1.6 1,986,809 - PGA1_c19140 0.52 -1.7
Or see this region's nucleotide sequence