Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17450 and PGA1_c17460 are separated by 403 nucleotides PGA1_c17460 and PGA1_c17470 overlap by 11 nucleotides PGA1_c17470 and PGA1_c17480 are separated by 260 nucleotides
PGA1_c17450: PGA1_c17450 - Uncharacterized protein conserved in bacteria, at 1,828,506 to 1,829,387
_c17450
PGA1_c17460: PGA1_c17460 - putative peptidase M23 family, at 1,829,791 to 1,831,122
_c17460
PGA1_c17470: PGA1_c17470 - Integral membrane protein CcmA involved in cell shape determination, at 1,831,112 to 1,831,654
_c17470
PGA1_c17480: PGA1_c17480 - hemolysin-type calcium-binding repeat-containing protein, at 1,831,915 to 1,833,159
_c17480
Position (kb)
1829
1830
1831
1832 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1828.791 kb on + strand, within PGA1_c17450 at 1828.809 kb on - strand, within PGA1_c17450 at 1829.077 kb on + strand, within PGA1_c17450 at 1829.125 kb on - strand, within PGA1_c17450 at 1829.153 kb on + strand, within PGA1_c17450 at 1829.158 kb on + strand, within PGA1_c17450 at 1829.161 kb on - strand, within PGA1_c17450 at 1829.168 kb on + strand, within PGA1_c17450 at 1829.331 kb on + strand at 1829.339 kb on - strand at 1829.381 kb on + strand at 1829.387 kb on + strand at 1829.389 kb on - strand at 1829.489 kb on + strand at 1829.621 kb on + strand at 1829.644 kb on + strand at 1829.677 kb on + strand at 1829.774 kb on + strand at 1829.956 kb on - strand, within PGA1_c17460 at 1830.100 kb on + strand, within PGA1_c17460 at 1830.151 kb on - strand, within PGA1_c17460 at 1830.610 kb on - strand, within PGA1_c17460 at 1830.631 kb on - strand, within PGA1_c17460 at 1831.076 kb on + strand at 1831.265 kb on + strand, within PGA1_c17470 at 1831.293 kb on - strand, within PGA1_c17470 at 1831.293 kb on - strand, within PGA1_c17470 at 1831.293 kb on - strand, within PGA1_c17470 at 1831.437 kb on + strand, within PGA1_c17470 at 1831.437 kb on + strand, within PGA1_c17470 at 1831.437 kb on + strand, within PGA1_c17470 at 1831.445 kb on - strand, within PGA1_c17470 at 1831.445 kb on - strand, within PGA1_c17470 at 1831.610 kb on + strand at 1831.655 kb on + strand at 1831.783 kb on - strand at 1831.791 kb on + strand at 1831.791 kb on + strand at 1831.793 kb on + strand at 1831.801 kb on - strand at 1831.801 kb on - strand at 1831.938 kb on + strand at 1831.944 kb on - strand at 1831.967 kb on - strand at 1831.996 kb on - strand at 1831.996 kb on - strand at 1832.056 kb on - strand, within PGA1_c17480
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 1,828,791 + PGA1_c17450 0.32 -0.7 1,828,809 - PGA1_c17450 0.34 +0.5 1,829,077 + PGA1_c17450 0.65 +0.4 1,829,125 - PGA1_c17450 0.70 -2.1 1,829,153 + PGA1_c17450 0.73 -0.6 1,829,158 + PGA1_c17450 0.74 +0.2 1,829,161 - PGA1_c17450 0.74 +0.9 1,829,168 + PGA1_c17450 0.75 +0.4 1,829,331 + -2.3 1,829,339 - -1.0 1,829,381 + +1.3 1,829,387 + -0.3 1,829,389 - -1.4 1,829,489 + +0.3 1,829,621 + +0.9 1,829,644 + -1.0 1,829,677 + -2.9 1,829,774 + -3.7 1,829,956 - PGA1_c17460 0.12 -1.3 1,830,100 + PGA1_c17460 0.23 -0.7 1,830,151 - PGA1_c17460 0.27 -2.1 1,830,610 - PGA1_c17460 0.61 -2.0 1,830,631 - PGA1_c17460 0.63 -2.1 1,831,076 + +1.4 1,831,265 + PGA1_c17470 0.28 -2.5 1,831,293 - PGA1_c17470 0.33 -1.7 1,831,293 - PGA1_c17470 0.33 -1.7 1,831,293 - PGA1_c17470 0.33 -0.6 1,831,437 + PGA1_c17470 0.60 -0.9 1,831,437 + PGA1_c17470 0.60 -0.9 1,831,437 + PGA1_c17470 0.60 -3.1 1,831,445 - PGA1_c17470 0.61 -1.7 1,831,445 - PGA1_c17470 0.61 +1.4 1,831,610 + -1.3 1,831,655 + -0.8 1,831,783 - -0.3 1,831,791 + -0.1 1,831,791 + -1.3 1,831,793 + +0.3 1,831,801 - -0.4 1,831,801 - +1.4 1,831,938 + +1.5 1,831,944 - -1.8 1,831,967 - +0.2 1,831,996 - -1.2 1,831,996 - -0.6 1,832,056 - PGA1_c17480 0.11 +2.0
Or see this region's nucleotide sequence