Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17460

Experiment: m.b. Benzethonium chloride 0.02 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPGA1_c17450 and PGA1_c17460 are separated by 403 nucleotidesPGA1_c17460 and PGA1_c17470 overlap by 11 nucleotidesPGA1_c17470 and PGA1_c17480 are separated by 260 nucleotides PGA1_c17450: PGA1_c17450 - Uncharacterized protein conserved in bacteria, at 1,828,506 to 1,829,387 _c17450 PGA1_c17460: PGA1_c17460 - putative peptidase M23 family, at 1,829,791 to 1,831,122 _c17460 PGA1_c17470: PGA1_c17470 - Integral membrane protein CcmA involved in cell shape determination, at 1,831,112 to 1,831,654 _c17470 PGA1_c17480: PGA1_c17480 - hemolysin-type calcium-binding repeat-containing protein, at 1,831,915 to 1,833,159 _c17480 Position (kb) 1829 1830 1831 1832Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1828.791 kb on + strand, within PGA1_c17450at 1828.809 kb on - strand, within PGA1_c17450at 1829.077 kb on + strand, within PGA1_c17450at 1829.125 kb on - strand, within PGA1_c17450at 1829.153 kb on + strand, within PGA1_c17450at 1829.158 kb on + strand, within PGA1_c17450at 1829.161 kb on - strand, within PGA1_c17450at 1829.168 kb on + strand, within PGA1_c17450at 1829.331 kb on + strandat 1829.339 kb on - strandat 1829.381 kb on + strandat 1829.387 kb on + strandat 1829.389 kb on - strandat 1829.489 kb on + strandat 1829.621 kb on + strandat 1829.644 kb on + strandat 1829.677 kb on + strandat 1829.774 kb on + strandat 1829.956 kb on - strand, within PGA1_c17460at 1830.100 kb on + strand, within PGA1_c17460at 1830.151 kb on - strand, within PGA1_c17460at 1830.610 kb on - strand, within PGA1_c17460at 1830.631 kb on - strand, within PGA1_c17460at 1831.076 kb on + strandat 1831.265 kb on + strand, within PGA1_c17470at 1831.293 kb on - strand, within PGA1_c17470at 1831.293 kb on - strand, within PGA1_c17470at 1831.293 kb on - strand, within PGA1_c17470at 1831.437 kb on + strand, within PGA1_c17470at 1831.437 kb on + strand, within PGA1_c17470at 1831.437 kb on + strand, within PGA1_c17470at 1831.445 kb on - strand, within PGA1_c17470at 1831.445 kb on - strand, within PGA1_c17470at 1831.610 kb on + strandat 1831.655 kb on + strandat 1831.783 kb on - strandat 1831.791 kb on + strandat 1831.791 kb on + strandat 1831.793 kb on + strandat 1831.801 kb on - strandat 1831.801 kb on - strandat 1831.938 kb on + strandat 1831.944 kb on - strandat 1831.967 kb on - strandat 1831.996 kb on - strandat 1831.996 kb on - strandat 1832.056 kb on - strand, within PGA1_c17480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
remove
1,828,791 + PGA1_c17450 0.32 -0.7
1,828,809 - PGA1_c17450 0.34 +0.5
1,829,077 + PGA1_c17450 0.65 +0.4
1,829,125 - PGA1_c17450 0.70 -2.1
1,829,153 + PGA1_c17450 0.73 -0.6
1,829,158 + PGA1_c17450 0.74 +0.2
1,829,161 - PGA1_c17450 0.74 +0.9
1,829,168 + PGA1_c17450 0.75 +0.4
1,829,331 + -2.3
1,829,339 - -1.0
1,829,381 + +1.3
1,829,387 + -0.3
1,829,389 - -1.4
1,829,489 + +0.3
1,829,621 + +0.9
1,829,644 + -1.0
1,829,677 + -2.9
1,829,774 + -3.7
1,829,956 - PGA1_c17460 0.12 -1.3
1,830,100 + PGA1_c17460 0.23 -0.7
1,830,151 - PGA1_c17460 0.27 -2.1
1,830,610 - PGA1_c17460 0.61 -2.0
1,830,631 - PGA1_c17460 0.63 -2.1
1,831,076 + +1.4
1,831,265 + PGA1_c17470 0.28 -2.5
1,831,293 - PGA1_c17470 0.33 -1.7
1,831,293 - PGA1_c17470 0.33 -1.7
1,831,293 - PGA1_c17470 0.33 -0.6
1,831,437 + PGA1_c17470 0.60 -0.9
1,831,437 + PGA1_c17470 0.60 -0.9
1,831,437 + PGA1_c17470 0.60 -3.1
1,831,445 - PGA1_c17470 0.61 -1.7
1,831,445 - PGA1_c17470 0.61 +1.4
1,831,610 + -1.3
1,831,655 + -0.8
1,831,783 - -0.3
1,831,791 + -0.1
1,831,791 + -1.3
1,831,793 + +0.3
1,831,801 - -0.4
1,831,801 - +1.4
1,831,938 + +1.5
1,831,944 - -1.8
1,831,967 - +0.2
1,831,996 - -1.2
1,831,996 - -0.6
1,832,056 - PGA1_c17480 0.11 +2.0

Or see this region's nucleotide sequence