Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c16900

Experiment: m.b. Benzethonium chloride 0.02 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c16890 and PGA1_c16900 overlap by 4 nucleotidesPGA1_c16900 and PGA1_c16910 are separated by 14 nucleotidesPGA1_c16910 and PGA1_c16920 overlap by 1 nucleotides PGA1_c16890: PGA1_c16890 - anthranilate phosphoribosyltransferase TrpD, at 1,763,636 to 1,764,664 _c16890 PGA1_c16900: PGA1_c16900 - uracil-DNA glycosylase Ung, at 1,764,661 to 1,765,314 _c16900 PGA1_c16910: PGA1_c16910 - indole-3-glycerol phosphate synthase TrpC, at 1,765,329 to 1,766,141 _c16910 PGA1_c16920: PGA1_c16920 - molybdenum cofactor biosynthesis protein C, at 1,766,141 to 1,766,611 _c16920 Position (kb) 1764 1765 1766Strain fitness (log2 ratio) -3 -2 -1 0 1at 1764.859 kb on - strand, within PGA1_c16900at 1765.189 kb on + strand, within PGA1_c16900at 1765.189 kb on + strand, within PGA1_c16900at 1765.192 kb on - strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.206 kb on + strand, within PGA1_c16900at 1765.214 kb on - strand, within PGA1_c16900at 1765.214 kb on - strand, within PGA1_c16900at 1765.216 kb on - strand, within PGA1_c16900at 1765.290 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM
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1,764,859 - PGA1_c16900 0.30 +0.6
1,765,189 + PGA1_c16900 0.81 -2.6
1,765,189 + PGA1_c16900 0.81 -1.7
1,765,192 - PGA1_c16900 0.81 -1.3
1,765,206 + PGA1_c16900 0.83 -0.6
1,765,206 + PGA1_c16900 0.83 -0.3
1,765,206 + PGA1_c16900 0.83 +0.0
1,765,206 + PGA1_c16900 0.83 -1.8
1,765,214 - PGA1_c16900 0.85 +0.2
1,765,214 - PGA1_c16900 0.85 -3.6
1,765,216 - PGA1_c16900 0.85 -1.9
1,765,290 + -2.8

Or see this region's nucleotide sequence