Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16750 and PGA1_c16760 are separated by 213 nucleotides PGA1_c16760 and PGA1_c16770 are separated by 852 nucleotides PGA1_c16770 and PGA1_c16780 are separated by 43 nucleotides
PGA1_c16750: PGA1_c16750 - putative MFS-type transporter, at 1,746,065 to 1,747,234
_c16750
PGA1_c16760: PGA1_c16760 - vitamin B12-dependent ribonucleotide reductase NrdJ, at 1,747,448 to 1,751,092
_c16760
PGA1_c16770: PGA1_c16770 - tRNA-Pro, at 1,751,945 to 1,752,021
_c16770
PGA1_c16780: PGA1_c16780 - Uncharacterized conserved protein, at 1,752,065 to 1,752,607
_c16780
Position (kb)
1747
1748
1749
1750
1751
1752 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1746.645 kb on - strand, within PGA1_c16750 at 1746.683 kb on + strand, within PGA1_c16750 at 1746.803 kb on - strand, within PGA1_c16750 at 1746.894 kb on - strand, within PGA1_c16750 at 1747.005 kb on + strand, within PGA1_c16750 at 1747.013 kb on - strand, within PGA1_c16750 at 1747.030 kb on - strand, within PGA1_c16750 at 1747.346 kb on - strand at 1747.350 kb on + strand at 1747.358 kb on - strand at 1747.584 kb on - strand at 1747.924 kb on - strand, within PGA1_c16760 at 1747.960 kb on - strand, within PGA1_c16760 at 1747.960 kb on - strand, within PGA1_c16760 at 1747.960 kb on - strand, within PGA1_c16760 at 1748.014 kb on - strand, within PGA1_c16760 at 1748.032 kb on + strand, within PGA1_c16760 at 1748.149 kb on + strand, within PGA1_c16760 at 1748.183 kb on + strand, within PGA1_c16760 at 1748.190 kb on - strand, within PGA1_c16760 at 1748.191 kb on - strand, within PGA1_c16760 at 1748.198 kb on + strand, within PGA1_c16760 at 1748.288 kb on - strand, within PGA1_c16760 at 1748.381 kb on + strand, within PGA1_c16760 at 1748.381 kb on + strand, within PGA1_c16760 at 1748.388 kb on + strand, within PGA1_c16760 at 1748.394 kb on + strand, within PGA1_c16760 at 1748.464 kb on + strand, within PGA1_c16760 at 1748.472 kb on + strand, within PGA1_c16760 at 1748.474 kb on + strand, within PGA1_c16760 at 1748.506 kb on - strand, within PGA1_c16760 at 1748.683 kb on - strand, within PGA1_c16760 at 1748.785 kb on - strand, within PGA1_c16760 at 1749.034 kb on - strand, within PGA1_c16760 at 1749.105 kb on + strand, within PGA1_c16760 at 1749.113 kb on - strand, within PGA1_c16760 at 1749.157 kb on + strand, within PGA1_c16760 at 1749.157 kb on + strand, within PGA1_c16760 at 1749.220 kb on + strand, within PGA1_c16760 at 1749.256 kb on - strand, within PGA1_c16760 at 1749.366 kb on + strand, within PGA1_c16760 at 1749.416 kb on + strand, within PGA1_c16760 at 1749.418 kb on + strand, within PGA1_c16760 at 1749.424 kb on - strand, within PGA1_c16760 at 1749.428 kb on + strand, within PGA1_c16760 at 1749.533 kb on - strand, within PGA1_c16760 at 1749.533 kb on - strand, within PGA1_c16760 at 1749.538 kb on - strand, within PGA1_c16760 at 1749.543 kb on - strand, within PGA1_c16760 at 1749.600 kb on + strand, within PGA1_c16760 at 1749.624 kb on + strand, within PGA1_c16760 at 1749.771 kb on + strand, within PGA1_c16760 at 1749.776 kb on + strand, within PGA1_c16760 at 1749.918 kb on - strand, within PGA1_c16760 at 1750.006 kb on + strand, within PGA1_c16760 at 1750.019 kb on - strand, within PGA1_c16760 at 1750.126 kb on + strand, within PGA1_c16760 at 1750.320 kb on + strand, within PGA1_c16760 at 1750.387 kb on + strand, within PGA1_c16760 at 1750.387 kb on + strand, within PGA1_c16760 at 1750.387 kb on + strand, within PGA1_c16760 at 1750.395 kb on - strand, within PGA1_c16760 at 1750.476 kb on + strand, within PGA1_c16760 at 1750.518 kb on - strand, within PGA1_c16760 at 1750.535 kb on - strand, within PGA1_c16760 at 1750.545 kb on - strand, within PGA1_c16760 at 1750.625 kb on - strand, within PGA1_c16760 at 1750.646 kb on - strand, within PGA1_c16760 at 1750.658 kb on + strand, within PGA1_c16760 at 1750.666 kb on - strand, within PGA1_c16760 at 1750.729 kb on - strand at 1750.731 kb on - strand at 1750.834 kb on + strand at 1750.948 kb on + strand at 1750.998 kb on - strand at 1751.188 kb on + strand at 1751.188 kb on + strand at 1751.188 kb on + strand at 1751.196 kb on - strand at 1751.196 kb on - strand at 1751.300 kb on - strand at 1751.398 kb on - strand at 1751.399 kb on - strand at 1751.435 kb on + strand at 1751.447 kb on - strand at 1751.488 kb on - strand at 1751.494 kb on + strand at 1751.502 kb on - strand at 1751.528 kb on - strand at 1751.551 kb on + strand at 1751.551 kb on + strand at 1751.551 kb on + strand at 1751.551 kb on + strand at 1751.552 kb on + strand at 1751.552 kb on + strand at 1751.552 kb on + strand at 1751.552 kb on + strand at 1751.559 kb on - strand at 1751.559 kb on - strand at 1751.559 kb on - strand at 1751.560 kb on - strand at 1751.560 kb on - strand at 1751.560 kb on - strand at 1751.560 kb on - strand at 1751.562 kb on + strand at 1751.598 kb on + strand at 1751.598 kb on + strand at 1751.606 kb on - strand at 1751.666 kb on + strand at 1751.686 kb on + strand at 1751.686 kb on + strand at 1751.694 kb on - strand at 1751.745 kb on - strand at 1751.754 kb on + strand at 1751.759 kb on + strand at 1751.795 kb on + strand at 1751.802 kb on + strand at 1751.819 kb on - strand at 1751.834 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 1,746,645 - PGA1_c16750 0.50 -0.7 1,746,683 + PGA1_c16750 0.53 +0.6 1,746,803 - PGA1_c16750 0.63 -0.3 1,746,894 - PGA1_c16750 0.71 +1.8 1,747,005 + PGA1_c16750 0.80 -0.6 1,747,013 - PGA1_c16750 0.81 -0.0 1,747,030 - PGA1_c16750 0.82 +0.5 1,747,346 - -0.1 1,747,350 + +0.5 1,747,358 - +0.4 1,747,584 - +0.7 1,747,924 - PGA1_c16760 0.13 -1.6 1,747,960 - PGA1_c16760 0.14 -2.0 1,747,960 - PGA1_c16760 0.14 -1.4 1,747,960 - PGA1_c16760 0.14 -1.8 1,748,014 - PGA1_c16760 0.16 -2.5 1,748,032 + PGA1_c16760 0.16 -0.9 1,748,149 + PGA1_c16760 0.19 -0.3 1,748,183 + PGA1_c16760 0.20 -0.3 1,748,190 - PGA1_c16760 0.20 -1.8 1,748,191 - PGA1_c16760 0.20 -2.5 1,748,198 + PGA1_c16760 0.21 -2.7 1,748,288 - PGA1_c16760 0.23 +0.4 1,748,381 + PGA1_c16760 0.26 -1.3 1,748,381 + PGA1_c16760 0.26 -1.3 1,748,388 + PGA1_c16760 0.26 +1.4 1,748,394 + PGA1_c16760 0.26 -1.8 1,748,464 + PGA1_c16760 0.28 -1.1 1,748,472 + PGA1_c16760 0.28 +1.0 1,748,474 + PGA1_c16760 0.28 -3.7 1,748,506 - PGA1_c16760 0.29 -1.3 1,748,683 - PGA1_c16760 0.34 +1.3 1,748,785 - PGA1_c16760 0.37 -3.1 1,749,034 - PGA1_c16760 0.44 -1.5 1,749,105 + PGA1_c16760 0.45 -1.9 1,749,113 - PGA1_c16760 0.46 -0.9 1,749,157 + PGA1_c16760 0.47 -3.3 1,749,157 + PGA1_c16760 0.47 -2.8 1,749,220 + PGA1_c16760 0.49 -2.1 1,749,256 - PGA1_c16760 0.50 -1.4 1,749,366 + PGA1_c16760 0.53 -2.3 1,749,416 + PGA1_c16760 0.54 -1.2 1,749,418 + PGA1_c16760 0.54 -1.5 1,749,424 - PGA1_c16760 0.54 -0.5 1,749,428 + PGA1_c16760 0.54 -0.3 1,749,533 - PGA1_c16760 0.57 +0.1 1,749,533 - PGA1_c16760 0.57 -2.1 1,749,538 - PGA1_c16760 0.57 -0.1 1,749,543 - PGA1_c16760 0.57 -0.0 1,749,600 + PGA1_c16760 0.59 -3.3 1,749,624 + PGA1_c16760 0.60 -0.3 1,749,771 + PGA1_c16760 0.64 -0.7 1,749,776 + PGA1_c16760 0.64 -1.7 1,749,918 - PGA1_c16760 0.68 +0.7 1,750,006 + PGA1_c16760 0.70 -2.5 1,750,019 - PGA1_c16760 0.71 -0.5 1,750,126 + PGA1_c16760 0.73 -2.1 1,750,320 + PGA1_c16760 0.79 -0.1 1,750,387 + PGA1_c16760 0.81 -0.9 1,750,387 + PGA1_c16760 0.81 -1.6 1,750,387 + PGA1_c16760 0.81 -0.6 1,750,395 - PGA1_c16760 0.81 -3.7 1,750,476 + PGA1_c16760 0.83 +0.7 1,750,518 - PGA1_c16760 0.84 -0.5 1,750,535 - PGA1_c16760 0.85 -0.6 1,750,545 - PGA1_c16760 0.85 -1.3 1,750,625 - PGA1_c16760 0.87 +1.0 1,750,646 - PGA1_c16760 0.88 -0.8 1,750,658 + PGA1_c16760 0.88 -0.3 1,750,666 - PGA1_c16760 0.88 -1.5 1,750,729 - -1.3 1,750,731 - -2.9 1,750,834 + +0.5 1,750,948 + +1.4 1,750,998 - -2.1 1,751,188 + -0.0 1,751,188 + -1.3 1,751,188 + -0.1 1,751,196 - -2.2 1,751,196 - -1.8 1,751,300 - -0.6 1,751,398 - +2.1 1,751,399 - -2.1 1,751,435 + +0.9 1,751,447 - +0.3 1,751,488 - +0.5 1,751,494 + +1.0 1,751,502 - -0.3 1,751,528 - -0.7 1,751,551 + +0.2 1,751,551 + -0.6 1,751,551 + +0.3 1,751,551 + -0.9 1,751,552 + -0.7 1,751,552 + +1.0 1,751,552 + +1.4 1,751,552 + +0.4 1,751,559 - -0.3 1,751,559 - +0.7 1,751,559 - +1.0 1,751,560 - -0.6 1,751,560 - +0.7 1,751,560 - +1.1 1,751,560 - +0.8 1,751,562 + +0.9 1,751,598 + +0.0 1,751,598 + -0.0 1,751,606 - +1.2 1,751,666 + +0.5 1,751,686 + +1.2 1,751,686 + -2.8 1,751,694 - -1.9 1,751,745 - +1.2 1,751,754 + -0.5 1,751,759 + +0.2 1,751,795 + +0.7 1,751,802 + -0.6 1,751,819 - +0.9 1,751,834 + +0.1
Or see this region's nucleotide sequence