Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c16500 and PGA1_c16510 are separated by 63 nucleotides PGA1_c16510 and PGA1_c16520 are separated by 73 nucleotides PGA1_c16520 and PGA1_c16530 overlap by 4 nucleotides
PGA1_c16500: PGA1_c16500 - trimethylamine methyltransferase MttB, at 1,711,867 to 1,713,417
_c16500
PGA1_c16510: PGA1_c16510 - glycosyl transferase-like protein, at 1,713,481 to 1,714,224
_c16510
PGA1_c16520: PGA1_c16520 - putative branched-chain amino acid transporter, ATP-binding protein, at 1,714,298 to 1,714,987
_c16520
PGA1_c16530: PGA1_c16530 - putative branched-chain amino acid transporter, ATP-binding protein, at 1,714,984 to 1,715,754
_c16530
Position (kb)
1713
1714
1715 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1712.506 kb on + strand, within PGA1_c16500 at 1712.506 kb on + strand, within PGA1_c16500 at 1712.542 kb on + strand, within PGA1_c16500 at 1712.590 kb on - strand, within PGA1_c16500 at 1712.590 kb on - strand, within PGA1_c16500 at 1712.590 kb on - strand, within PGA1_c16500 at 1712.678 kb on - strand, within PGA1_c16500 at 1712.690 kb on - strand, within PGA1_c16500 at 1712.725 kb on - strand, within PGA1_c16500 at 1712.813 kb on + strand, within PGA1_c16500 at 1713.041 kb on + strand, within PGA1_c16500 at 1713.046 kb on + strand, within PGA1_c16500 at 1713.067 kb on - strand, within PGA1_c16500 at 1713.119 kb on + strand, within PGA1_c16500 at 1713.119 kb on + strand, within PGA1_c16500 at 1713.119 kb on + strand, within PGA1_c16500 at 1713.119 kb on + strand, within PGA1_c16500 at 1713.119 kb on + strand, within PGA1_c16500 at 1713.119 kb on + strand, within PGA1_c16500 at 1713.119 kb on + strand, within PGA1_c16500 at 1713.121 kb on + strand, within PGA1_c16500 at 1713.127 kb on - strand, within PGA1_c16500 at 1713.127 kb on - strand, within PGA1_c16500 at 1713.127 kb on - strand, within PGA1_c16500 at 1713.138 kb on - strand, within PGA1_c16500 at 1713.245 kb on + strand, within PGA1_c16500 at 1713.271 kb on - strand at 1713.275 kb on + strand at 1713.280 kb on + strand at 1713.283 kb on - strand at 1713.290 kb on + strand at 1713.293 kb on - strand at 1713.318 kb on - strand at 1713.460 kb on - strand at 1713.604 kb on + strand, within PGA1_c16510 at 1713.607 kb on - strand, within PGA1_c16510 at 1713.717 kb on - strand, within PGA1_c16510 at 1713.717 kb on - strand, within PGA1_c16510 at 1713.815 kb on - strand, within PGA1_c16510 at 1713.825 kb on - strand, within PGA1_c16510 at 1713.950 kb on + strand, within PGA1_c16510 at 1714.032 kb on - strand, within PGA1_c16510 at 1714.051 kb on + strand, within PGA1_c16510 at 1714.154 kb on - strand at 1714.166 kb on - strand at 1714.255 kb on - strand at 1714.279 kb on + strand at 1714.360 kb on - strand at 1714.361 kb on - strand at 1714.427 kb on - strand, within PGA1_c16520 at 1714.497 kb on + strand, within PGA1_c16520 at 1714.563 kb on + strand, within PGA1_c16520 at 1714.589 kb on + strand, within PGA1_c16520 at 1714.676 kb on - strand, within PGA1_c16520 at 1714.745 kb on + strand, within PGA1_c16520 at 1714.836 kb on + strand, within PGA1_c16520 at 1714.921 kb on - strand at 1715.035 kb on - strand at 1715.206 kb on - strand, within PGA1_c16530 at 1715.210 kb on + strand, within PGA1_c16530
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 1,712,506 + PGA1_c16500 0.41 -0.4 1,712,506 + PGA1_c16500 0.41 +0.9 1,712,542 + PGA1_c16500 0.44 +0.7 1,712,590 - PGA1_c16500 0.47 -0.8 1,712,590 - PGA1_c16500 0.47 +0.7 1,712,590 - PGA1_c16500 0.47 -1.6 1,712,678 - PGA1_c16500 0.52 +1.3 1,712,690 - PGA1_c16500 0.53 -0.5 1,712,725 - PGA1_c16500 0.55 +0.1 1,712,813 + PGA1_c16500 0.61 +0.8 1,713,041 + PGA1_c16500 0.76 +1.0 1,713,046 + PGA1_c16500 0.76 -0.3 1,713,067 - PGA1_c16500 0.77 +0.4 1,713,119 + PGA1_c16500 0.81 +0.7 1,713,119 + PGA1_c16500 0.81 -1.1 1,713,119 + PGA1_c16500 0.81 -0.9 1,713,119 + PGA1_c16500 0.81 +0.2 1,713,119 + PGA1_c16500 0.81 +0.4 1,713,119 + PGA1_c16500 0.81 +1.5 1,713,119 + PGA1_c16500 0.81 -0.3 1,713,121 + PGA1_c16500 0.81 -2.4 1,713,127 - PGA1_c16500 0.81 -0.2 1,713,127 - PGA1_c16500 0.81 -1.0 1,713,127 - PGA1_c16500 0.81 -1.4 1,713,138 - PGA1_c16500 0.82 +0.4 1,713,245 + PGA1_c16500 0.89 -0.3 1,713,271 - +0.1 1,713,275 + -0.6 1,713,280 + -0.5 1,713,283 - +0.1 1,713,290 + -0.8 1,713,293 - -0.9 1,713,318 - +0.9 1,713,460 - +0.8 1,713,604 + PGA1_c16510 0.17 -1.7 1,713,607 - PGA1_c16510 0.17 -2.2 1,713,717 - PGA1_c16510 0.32 -0.3 1,713,717 - PGA1_c16510 0.32 -2.5 1,713,815 - PGA1_c16510 0.45 -1.1 1,713,825 - PGA1_c16510 0.46 -3.6 1,713,950 + PGA1_c16510 0.63 -2.8 1,714,032 - PGA1_c16510 0.74 -0.7 1,714,051 + PGA1_c16510 0.77 -1.5 1,714,154 - -1.2 1,714,166 - +0.2 1,714,255 - -0.1 1,714,279 + +0.6 1,714,360 - +0.4 1,714,361 - -1.7 1,714,427 - PGA1_c16520 0.19 +0.8 1,714,497 + PGA1_c16520 0.29 -0.1 1,714,563 + PGA1_c16520 0.38 +0.9 1,714,589 + PGA1_c16520 0.42 -0.7 1,714,676 - PGA1_c16520 0.55 +0.0 1,714,745 + PGA1_c16520 0.65 -0.1 1,714,836 + PGA1_c16520 0.78 -0.3 1,714,921 - -0.2 1,715,035 - -0.6 1,715,206 - PGA1_c16530 0.29 +0.2 1,715,210 + PGA1_c16530 0.29 +0.8
Or see this region's nucleotide sequence