Experiment: m.b. Benzethonium chloride 0.02 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c13600 and PGA1_c13610 are separated by 3 nucleotides PGA1_c13610 and PGA1_c13620 are separated by 300 nucleotides PGA1_c13620 and PGA1_c13630 are separated by 203 nucleotides
PGA1_c13600: PGA1_c13600 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,405,155 to 1,406,297
_c13600
PGA1_c13610: PGA1_c13610 - ABC-type transport system, involved in lipoprotein release, permease component, at 1,406,301 to 1,407,503
_c13610
PGA1_c13620: PGA1_c13620 - hypothetical protein, at 1,407,804 to 1,407,971
_c13620
PGA1_c13630: PGA1_c13630 - 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal., at 1,408,175 to 1,409,122
_c13630
Position (kb)
1406
1407
1408 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1405.337 kb on + strand, within PGA1_c13600 at 1406.030 kb on + strand, within PGA1_c13600 at 1406.088 kb on - strand, within PGA1_c13600 at 1406.261 kb on + strand at 1406.261 kb on + strand at 1406.261 kb on + strand at 1406.273 kb on + strand at 1406.291 kb on + strand at 1406.346 kb on - strand at 1406.428 kb on - strand, within PGA1_c13610 at 1406.939 kb on + strand, within PGA1_c13610 at 1407.080 kb on + strand, within PGA1_c13610 at 1407.453 kb on - strand at 1407.504 kb on + strand at 1407.514 kb on + strand at 1407.514 kb on + strand at 1407.514 kb on + strand at 1407.642 kb on + strand at 1407.650 kb on - strand at 1407.672 kb on - strand at 1407.676 kb on - strand at 1407.683 kb on - strand at 1407.695 kb on + strand at 1407.735 kb on + strand at 1407.735 kb on + strand at 1407.735 kb on + strand at 1407.737 kb on - strand at 1407.743 kb on - strand at 1407.743 kb on - strand at 1407.743 kb on - strand at 1407.743 kb on - strand at 1407.743 kb on - strand at 1407.743 kb on - strand at 1407.747 kb on - strand at 1407.754 kb on + strand at 1407.754 kb on + strand at 1407.754 kb on + strand at 1407.754 kb on + strand at 1407.754 kb on + strand at 1407.754 kb on + strand at 1407.762 kb on - strand at 1407.762 kb on - strand at 1407.762 kb on - strand at 1407.762 kb on - strand at 1407.779 kb on + strand at 1407.782 kb on + strand at 1407.803 kb on + strand at 1407.807 kb on - strand at 1407.843 kb on + strand, within PGA1_c13620 at 1407.848 kb on + strand, within PGA1_c13620 at 1407.905 kb on + strand, within PGA1_c13620 at 1407.926 kb on + strand, within PGA1_c13620 at 1407.929 kb on - strand, within PGA1_c13620 at 1407.934 kb on - strand, within PGA1_c13620 at 1407.934 kb on - strand, within PGA1_c13620 at 1407.983 kb on - strand at 1407.992 kb on + strand at 1407.992 kb on + strand at 1407.992 kb on + strand at 1408.000 kb on - strand at 1408.038 kb on + strand at 1408.059 kb on + strand at 1408.059 kb on + strand at 1408.059 kb on + strand at 1408.067 kb on - strand at 1408.110 kb on + strand at 1408.149 kb on + strand at 1408.149 kb on + strand at 1408.157 kb on - strand at 1408.157 kb on - strand at 1408.177 kb on + strand at 1408.182 kb on + strand at 1408.244 kb on - strand at 1408.248 kb on + strand at 1408.248 kb on + strand at 1408.248 kb on + strand at 1408.248 kb on + strand at 1408.248 kb on + strand at 1408.253 kb on + strand at 1408.255 kb on + strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.256 kb on - strand at 1408.260 kb on + strand at 1408.277 kb on - strand, within PGA1_c13630 at 1408.283 kb on - strand, within PGA1_c13630 at 1408.325 kb on + strand, within PGA1_c13630 at 1408.325 kb on + strand, within PGA1_c13630 at 1408.333 kb on - strand, within PGA1_c13630 at 1408.357 kb on - strand, within PGA1_c13630 at 1408.401 kb on - strand, within PGA1_c13630 at 1408.403 kb on - strand, within PGA1_c13630 at 1408.427 kb on + strand, within PGA1_c13630 at 1408.427 kb on + strand, within PGA1_c13630 at 1408.435 kb on - strand, within PGA1_c13630 at 1408.435 kb on - strand, within PGA1_c13630 at 1408.435 kb on - strand, within PGA1_c13630 at 1408.435 kb on - strand, within PGA1_c13630 at 1408.442 kb on + strand, within PGA1_c13630 at 1408.442 kb on + strand, within PGA1_c13630 at 1408.442 kb on + strand, within PGA1_c13630 at 1408.442 kb on + strand, within PGA1_c13630 at 1408.447 kb on + strand, within PGA1_c13630 at 1408.450 kb on - strand, within PGA1_c13630 at 1408.450 kb on - strand, within PGA1_c13630 at 1408.450 kb on - strand, within PGA1_c13630 at 1408.450 kb on - strand, within PGA1_c13630 at 1408.477 kb on - strand, within PGA1_c13630
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Benzethonium chloride 0.02 mM remove 1,405,337 + PGA1_c13600 0.16 -2.6 1,406,030 + PGA1_c13600 0.77 -0.9 1,406,088 - PGA1_c13600 0.82 -1.9 1,406,261 + -0.3 1,406,261 + -1.0 1,406,261 + -0.9 1,406,273 + -0.2 1,406,291 + +0.4 1,406,346 - -1.6 1,406,428 - PGA1_c13610 0.11 -2.3 1,406,939 + PGA1_c13610 0.53 -1.6 1,407,080 + PGA1_c13610 0.65 -2.3 1,407,453 - +0.7 1,407,504 + -0.6 1,407,514 + +0.2 1,407,514 + +0.9 1,407,514 + +0.2 1,407,642 + +0.0 1,407,650 - -0.1 1,407,672 - -0.5 1,407,676 - +1.0 1,407,683 - -1.6 1,407,695 + -0.6 1,407,735 + +0.5 1,407,735 + +1.7 1,407,735 + +0.3 1,407,737 - +0.8 1,407,743 - +0.0 1,407,743 - -1.3 1,407,743 - +0.3 1,407,743 - +0.7 1,407,743 - -1.2 1,407,743 - -1.5 1,407,747 - -0.3 1,407,754 + +1.3 1,407,754 + +0.6 1,407,754 + -0.1 1,407,754 + -0.1 1,407,754 + +0.4 1,407,754 + -0.5 1,407,762 - -0.2 1,407,762 - -0.7 1,407,762 - -1.3 1,407,762 - +0.8 1,407,779 + +0.3 1,407,782 + -0.9 1,407,803 + +1.4 1,407,807 - +0.9 1,407,843 + PGA1_c13620 0.23 +0.3 1,407,848 + PGA1_c13620 0.26 +0.8 1,407,905 + PGA1_c13620 0.60 -0.1 1,407,926 + PGA1_c13620 0.73 +0.9 1,407,929 - PGA1_c13620 0.74 +0.7 1,407,934 - PGA1_c13620 0.77 -2.3 1,407,934 - PGA1_c13620 0.77 +0.9 1,407,983 - -0.1 1,407,992 + +2.5 1,407,992 + +0.7 1,407,992 + +1.6 1,408,000 - -0.5 1,408,038 + -0.5 1,408,059 + +0.4 1,408,059 + +0.0 1,408,059 + +0.5 1,408,067 - -0.5 1,408,110 + -0.5 1,408,149 + +0.7 1,408,149 + +2.0 1,408,157 - +0.6 1,408,157 - -1.2 1,408,177 + +0.9 1,408,182 + +1.2 1,408,244 - -0.8 1,408,248 + -0.7 1,408,248 + +0.4 1,408,248 + -1.0 1,408,248 + -0.2 1,408,248 + -0.5 1,408,253 + -0.9 1,408,255 + -0.3 1,408,256 - +1.0 1,408,256 - -0.1 1,408,256 - +1.0 1,408,256 - -0.1 1,408,256 - -1.1 1,408,256 - +0.8 1,408,256 - -0.3 1,408,256 - +0.7 1,408,256 - -1.1 1,408,260 + -1.1 1,408,277 - PGA1_c13630 0.11 +0.3 1,408,283 - PGA1_c13630 0.11 -0.1 1,408,325 + PGA1_c13630 0.16 +0.4 1,408,325 + PGA1_c13630 0.16 -0.0 1,408,333 - PGA1_c13630 0.17 -0.7 1,408,357 - PGA1_c13630 0.19 -0.3 1,408,401 - PGA1_c13630 0.24 +1.0 1,408,403 - PGA1_c13630 0.24 +0.5 1,408,427 + PGA1_c13630 0.27 +0.9 1,408,427 + PGA1_c13630 0.27 +1.0 1,408,435 - PGA1_c13630 0.27 +2.4 1,408,435 - PGA1_c13630 0.27 +0.0 1,408,435 - PGA1_c13630 0.27 -0.2 1,408,435 - PGA1_c13630 0.27 -0.6 1,408,442 + PGA1_c13630 0.28 +0.3 1,408,442 + PGA1_c13630 0.28 +0.0 1,408,442 + PGA1_c13630 0.28 -0.4 1,408,442 + PGA1_c13630 0.28 -0.8 1,408,447 + PGA1_c13630 0.29 -0.6 1,408,450 - PGA1_c13630 0.29 +0.5 1,408,450 - PGA1_c13630 0.29 -0.9 1,408,450 - PGA1_c13630 0.29 -1.6 1,408,450 - PGA1_c13630 0.29 +0.5 1,408,477 - PGA1_c13630 0.32 -0.2
Or see this region's nucleotide sequence