Strain Fitness in Dechlorosoma suillum PS around Dsui_3258

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3257 and Dsui_3258 are separated by 2 nucleotidesDsui_3258 and Dsui_3259 are separated by 138 nucleotidesDsui_3259 and Dsui_3260 are separated by 65 nucleotides Dsui_3257: Dsui_3257 - bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities, at 3,496,565 to 3,497,710 _3257 Dsui_3258: Dsui_3258 - mannose-6-phosphate isomerase, at 3,497,713 to 3,498,105 _3258 Dsui_3259: Dsui_3259 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 3,498,244 to 3,499,014 _3259 Dsui_3260: Dsui_3260 - vacuolar-type H(+)-translocating pyrophosphatase, at 3,499,080 to 3,501,149 _3260 Position (kb) 3497 3498 3499Strain fitness (log2 ratio) -2 -1 0 1at 3496.714 kb on + strand, within Dsui_3257at 3496.722 kb on - strand, within Dsui_3257at 3496.724 kb on + strand, within Dsui_3257at 3496.783 kb on - strand, within Dsui_3257at 3496.812 kb on - strand, within Dsui_3257at 3496.843 kb on - strand, within Dsui_3257at 3496.911 kb on - strandat 3496.980 kb on + strandat 3496.985 kb on + strandat 3496.988 kb on - strand, within Dsui_3257at 3497.034 kb on - strand, within Dsui_3257at 3497.063 kb on + strand, within Dsui_3257at 3497.126 kb on + strand, within Dsui_3257at 3497.138 kb on - strand, within Dsui_3257at 3497.160 kb on - strand, within Dsui_3257at 3497.290 kb on + strandat 3497.290 kb on + strandat 3497.290 kb on + strand, within Dsui_3257at 3497.314 kb on + strandat 3497.356 kb on - strand, within Dsui_3257at 3497.363 kb on - strand, within Dsui_3257at 3497.397 kb on - strand, within Dsui_3257at 3497.397 kb on - strand, within Dsui_3257at 3497.412 kb on - strand, within Dsui_3257at 3497.427 kb on - strand, within Dsui_3257at 3497.574 kb on + strand, within Dsui_3257at 3497.665 kb on - strandat 3497.712 kb on + strandat 3497.785 kb on - strand, within Dsui_3258at 3497.802 kb on + strand, within Dsui_3258at 3497.810 kb on - strand, within Dsui_3258at 3497.823 kb on - strand, within Dsui_3258at 3497.923 kb on - strand, within Dsui_3258at 3497.955 kb on - strand, within Dsui_3258at 3498.106 kb on - strandat 3498.145 kb on + strandat 3498.247 kb on + strandat 3498.332 kb on + strand, within Dsui_3259at 3498.517 kb on + strand, within Dsui_3259at 3498.522 kb on - strandat 3498.552 kb on - strandat 3498.696 kb on - strand, within Dsui_3259at 3498.744 kb on + strand, within Dsui_3259at 3498.764 kb on + strand, within Dsui_3259at 3498.770 kb on + strand, within Dsui_3259at 3498.770 kb on + strand, within Dsui_3259at 3498.778 kb on - strandat 3498.920 kb on + strand, within Dsui_3259at 3498.940 kb on + strandat 3498.941 kb on - strandat 3499.077 kb on + strandat 3499.078 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,496,714 + Dsui_3257 0.13 -1.0
3,496,722 - Dsui_3257 0.14 +0.6
3,496,724 + Dsui_3257 0.14 -1.4
3,496,783 - Dsui_3257 0.19 -2.0
3,496,812 - Dsui_3257 0.22 -1.2
3,496,843 - Dsui_3257 0.24 -2.2
3,496,911 - +0.6
3,496,980 + -1.0
3,496,985 + -1.0
3,496,988 - Dsui_3257 0.37 -1.0
3,497,034 - Dsui_3257 0.41 -2.0
3,497,063 + Dsui_3257 0.43 +0.6
3,497,126 + Dsui_3257 0.49 -0.4
3,497,138 - Dsui_3257 0.50 -2.2
3,497,160 - Dsui_3257 0.52 -2.4
3,497,290 + +0.6
3,497,290 + +0.6
3,497,290 + Dsui_3257 0.63 +0.6
3,497,314 + -0.4
3,497,356 - Dsui_3257 0.69 +1.6
3,497,363 - Dsui_3257 0.70 -1.2
3,497,397 - Dsui_3257 0.73 -1.0
3,497,397 - Dsui_3257 0.73 +0.2
3,497,412 - Dsui_3257 0.74 +0.6
3,497,427 - Dsui_3257 0.75 -1.4
3,497,574 + Dsui_3257 0.88 -1.4
3,497,665 - -0.4
3,497,712 + -1.8
3,497,785 - Dsui_3258 0.18 -1.4
3,497,802 + Dsui_3258 0.23 +0.6
3,497,810 - Dsui_3258 0.25 -1.8
3,497,823 - Dsui_3258 0.28 -2.4
3,497,923 - Dsui_3258 0.53 -1.0
3,497,955 - Dsui_3258 0.62 +0.4
3,498,106 - -0.4
3,498,145 + +0.6
3,498,247 + -0.4
3,498,332 + Dsui_3259 0.11 -0.4
3,498,517 + Dsui_3259 0.35 -0.4
3,498,522 - +0.6
3,498,552 - +0.6
3,498,696 - Dsui_3259 0.59 -1.0
3,498,744 + Dsui_3259 0.65 -1.8
3,498,764 + Dsui_3259 0.67 -1.0
3,498,770 + Dsui_3259 0.68 -1.0
3,498,770 + Dsui_3259 0.68 -1.0
3,498,778 - +0.6
3,498,920 + Dsui_3259 0.88 -2.2
3,498,940 + +0.6
3,498,941 - +0.6
3,499,077 + +0.6
3,499,078 + -1.0

Or see this region's nucleotide sequence