Strain Fitness in Dechlorosoma suillum PS around Dsui_3092

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3091 and Dsui_3092 are separated by 122 nucleotidesDsui_3092 and Dsui_3093 are separated by 318 nucleotidesDsui_3093 and Dsui_3094 are separated by 136 nucleotides Dsui_3091: Dsui_3091 - integral membrane protein, TerC family, at 3,308,780 to 3,309,745 _3091 Dsui_3092: Dsui_3092 - ATP-dependent DNA helicase RecQ, at 3,309,868 to 3,311,706 _3092 Dsui_3093: Dsui_3093 - hypothetical protein, at 3,312,025 to 3,312,339 _3093 Dsui_3094: Dsui_3094 - putative HD superfamily hydrolase, at 3,312,476 to 3,313,132 _3094 Position (kb) 3309 3310 3311 3312Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3308.903 kb on + strand, within Dsui_3091at 3308.903 kb on + strand, within Dsui_3091at 3308.911 kb on - strandat 3308.925 kb on + strand, within Dsui_3091at 3308.931 kb on + strand, within Dsui_3091at 3309.061 kb on + strand, within Dsui_3091at 3309.115 kb on + strand, within Dsui_3091at 3309.147 kb on + strand, within Dsui_3091at 3309.212 kb on - strandat 3309.235 kb on + strand, within Dsui_3091at 3309.489 kb on - strandat 3309.538 kb on - strand, within Dsui_3091at 3309.592 kb on - strand, within Dsui_3091at 3309.612 kb on + strand, within Dsui_3091at 3309.823 kb on + strandat 3310.041 kb on + strandat 3310.130 kb on - strand, within Dsui_3092at 3310.162 kb on + strand, within Dsui_3092at 3310.504 kb on + strand, within Dsui_3092at 3310.535 kb on - strand, within Dsui_3092at 3310.542 kb on - strand, within Dsui_3092at 3310.574 kb on - strand, within Dsui_3092at 3310.702 kb on - strandat 3310.796 kb on + strand, within Dsui_3092at 3310.806 kb on + strand, within Dsui_3092at 3310.989 kb on - strand, within Dsui_3092at 3310.989 kb on - strand, within Dsui_3092at 3311.153 kb on + strand, within Dsui_3092at 3311.212 kb on + strandat 3311.214 kb on - strand, within Dsui_3092at 3311.257 kb on - strand, within Dsui_3092at 3311.269 kb on + strand, within Dsui_3092at 3311.323 kb on - strand, within Dsui_3092at 3311.371 kb on - strand, within Dsui_3092at 3311.450 kb on - strand, within Dsui_3092at 3311.469 kb on + strand, within Dsui_3092at 3311.561 kb on + strandat 3311.590 kb on - strandat 3311.615 kb on + strandat 3311.816 kb on - strandat 3311.816 kb on - strandat 3311.854 kb on - strandat 3311.855 kb on - strandat 3311.865 kb on + strandat 3311.865 kb on + strandat 3311.873 kb on - strandat 3311.975 kb on - strandat 3312.020 kb on + strandat 3312.105 kb on + strand, within Dsui_3093at 3312.137 kb on + strand, within Dsui_3093at 3312.248 kb on + strandat 3312.276 kb on - strandat 3312.379 kb on - strandat 3312.400 kb on - strandat 3312.450 kb on - strandat 3312.624 kb on + strandat 3312.682 kb on + strandat 3312.683 kb on + strand, within Dsui_3094at 3312.685 kb on - strand, within Dsui_3094at 3312.685 kb on - strand, within Dsui_3094at 3312.705 kb on + strand, within Dsui_3094at 3312.705 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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3,308,903 + Dsui_3091 0.13 -1.1
3,308,903 + Dsui_3091 0.13 -1.5
3,308,911 - +0.5
3,308,925 + Dsui_3091 0.15 -0.5
3,308,931 + Dsui_3091 0.16 +0.1
3,309,061 + Dsui_3091 0.29 -0.3
3,309,115 + Dsui_3091 0.35 -1.5
3,309,147 + Dsui_3091 0.38 +0.5
3,309,212 - -0.5
3,309,235 + Dsui_3091 0.47 -1.0
3,309,489 - +0.5
3,309,538 - Dsui_3091 0.78 -0.0
3,309,592 - Dsui_3091 0.84 +0.5
3,309,612 + Dsui_3091 0.86 +0.3
3,309,823 + +0.5
3,310,041 + +0.5
3,310,130 - Dsui_3092 0.14 +0.5
3,310,162 + Dsui_3092 0.16 -1.5
3,310,504 + Dsui_3092 0.35 -1.5
3,310,535 - Dsui_3092 0.36 -1.0
3,310,542 - Dsui_3092 0.37 -0.5
3,310,574 - Dsui_3092 0.38 -0.5
3,310,702 - -1.0
3,310,796 + Dsui_3092 0.50 -1.9
3,310,806 + Dsui_3092 0.51 -0.0
3,310,989 - Dsui_3092 0.61 -1.5
3,310,989 - Dsui_3092 0.61 -2.3
3,311,153 + Dsui_3092 0.70 +3.1
3,311,212 + -1.5
3,311,214 - Dsui_3092 0.73 +0.5
3,311,257 - Dsui_3092 0.76 +0.5
3,311,269 + Dsui_3092 0.76 -1.7
3,311,323 - Dsui_3092 0.79 -1.8
3,311,371 - Dsui_3092 0.82 -1.8
3,311,450 - Dsui_3092 0.86 -2.6
3,311,469 + Dsui_3092 0.87 -1.5
3,311,561 + +0.5
3,311,590 - -0.5
3,311,615 + +0.3
3,311,816 - +0.6
3,311,816 - -1.0
3,311,854 - +0.6
3,311,855 - +0.6
3,311,865 + +0.6
3,311,865 + -0.4
3,311,873 - +0.6
3,311,975 - -0.4
3,312,020 + -0.4
3,312,105 + Dsui_3093 0.25 -0.4
3,312,137 + Dsui_3093 0.36 -0.4
3,312,248 + +0.6
3,312,276 - -0.4
3,312,379 - +0.6
3,312,400 - -1.4
3,312,450 - -1.4
3,312,624 + +0.6
3,312,682 + -0.4
3,312,683 + Dsui_3094 0.32 -1.0
3,312,685 - Dsui_3094 0.32 +0.6
3,312,685 - Dsui_3094 0.32 -2.0
3,312,705 + Dsui_3094 0.35 +0.6
3,312,705 + +0.6

Or see this region's nucleotide sequence