Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3004 and Dsui_3005 are separated by 11 nucleotides Dsui_3005 and Dsui_3006 are separated by 136 nucleotides Dsui_3006 and Dsui_3007 are separated by 4 nucleotides
Dsui_3004: Dsui_3004 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,217,040 to 3,219,646
_3004
Dsui_3005: Dsui_3005 - transcription elongation factor GreB, at 3,219,658 to 3,220,215
_3005
Dsui_3006: Dsui_3006 - (NiFe) hydrogenase assembly chaperone, HybE family, at 3,220,352 to 3,220,969
_3006
Dsui_3007: Dsui_3007 - hydrogenase assembly chaperone HypC/HupF, at 3,220,974 to 3,221,261
_3007
Position (kb)
3219
3220
3221 Strain fitness (log2 ratio)
-2
-1
0
1 at 3218.672 kb on - strand, within Dsui_3004 at 3218.900 kb on + strand, within Dsui_3004 at 3218.963 kb on - strand, within Dsui_3004 at 3219.002 kb on + strand, within Dsui_3004 at 3219.007 kb on + strand at 3219.007 kb on + strand, within Dsui_3004 at 3219.015 kb on - strand, within Dsui_3004 at 3219.027 kb on + strand, within Dsui_3004 at 3219.027 kb on + strand at 3219.219 kb on - strand, within Dsui_3004 at 3219.224 kb on + strand, within Dsui_3004 at 3219.334 kb on + strand at 3219.413 kb on - strand at 3219.434 kb on - strand at 3219.581 kb on + strand at 3219.589 kb on - strand at 3219.589 kb on - strand at 3219.771 kb on - strand, within Dsui_3005 at 3219.771 kb on - strand, within Dsui_3005 at 3219.989 kb on - strand, within Dsui_3005 at 3220.047 kb on - strand, within Dsui_3005 at 3220.047 kb on - strand, within Dsui_3005 at 3220.127 kb on - strand, within Dsui_3005 at 3220.132 kb on - strand, within Dsui_3005 at 3220.186 kb on + strand at 3220.205 kb on + strand at 3220.417 kb on - strand, within Dsui_3006 at 3220.615 kb on - strand, within Dsui_3006 at 3221.107 kb on - strand, within Dsui_3007 at 3221.137 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 3,218,672 - Dsui_3004 0.63 -0.2 3,218,900 + Dsui_3004 0.71 -2.0 3,218,963 - Dsui_3004 0.74 -0.0 3,219,002 + Dsui_3004 0.75 -1.7 3,219,007 + +0.6 3,219,007 + Dsui_3004 0.75 -0.4 3,219,015 - Dsui_3004 0.76 -0.0 3,219,027 + Dsui_3004 0.76 +0.6 3,219,027 + +0.6 3,219,219 - Dsui_3004 0.84 -0.1 3,219,224 + Dsui_3004 0.84 -1.0 3,219,334 + +0.6 3,219,413 - +0.0 3,219,434 - +0.0 3,219,581 + +0.6 3,219,589 - -0.1 3,219,589 - +0.1 3,219,771 - Dsui_3005 0.20 +0.0 3,219,771 - Dsui_3005 0.20 -0.2 3,219,989 - Dsui_3005 0.59 -0.3 3,220,047 - Dsui_3005 0.70 -0.0 3,220,047 - Dsui_3005 0.70 -0.1 3,220,127 - Dsui_3005 0.84 -0.2 3,220,132 - Dsui_3005 0.85 -0.1 3,220,186 + +0.6 3,220,205 + -0.4 3,220,417 - Dsui_3006 0.11 -2.0 3,220,615 - Dsui_3006 0.43 -2.2 3,221,107 - Dsui_3007 0.46 -1.4 3,221,137 + -0.4
Or see this region's nucleotide sequence