Strain Fitness in Dechlorosoma suillum PS around Dsui_2766

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2764 and Dsui_2765 are separated by 4 nucleotidesDsui_2765 and Dsui_2766 are separated by 79 nucleotidesDsui_2766 and Dsui_2767 are separated by 67 nucleotidesDsui_2767 and Dsui_2768 are separated by 109 nucleotides Dsui_2764: Dsui_2764 - hypothetical protein, at 2,923,217 to 2,923,468 _2764 Dsui_2765: Dsui_2765 - putative membrane protein, at 2,923,473 to 2,924,222 _2765 Dsui_2766: Dsui_2766 - putative homoserine kinase type II (protein kinase fold), at 2,924,302 to 2,925,309 _2766 Dsui_2767: Dsui_2767 - glutaredoxin-like protein, at 2,925,377 to 2,925,763 _2767 Dsui_2768: Dsui_2768 - uncharacterized protein involved in outer membrane biogenesis, at 2,925,873 to 2,926,982 _2768 Position (kb) 2924 2925 2926Strain fitness (log2 ratio) -2 -1 0 1at 2923.370 kb on - strand, within Dsui_2764at 2923.493 kb on + strandat 2923.501 kb on - strandat 2923.510 kb on + strandat 2923.511 kb on - strandat 2923.555 kb on + strand, within Dsui_2765at 2923.597 kb on + strand, within Dsui_2765at 2923.696 kb on - strand, within Dsui_2765at 2923.788 kb on - strand, within Dsui_2765at 2923.799 kb on - strand, within Dsui_2765at 2923.822 kb on + strand, within Dsui_2765at 2923.887 kb on + strand, within Dsui_2765at 2924.057 kb on + strand, within Dsui_2765at 2924.139 kb on - strand, within Dsui_2765at 2924.139 kb on - strand, within Dsui_2765at 2924.159 kb on + strandat 2924.209 kb on - strandat 2924.270 kb on + strandat 2924.326 kb on + strandat 2924.484 kb on + strand, within Dsui_2766at 2924.610 kb on - strandat 2924.784 kb on + strand, within Dsui_2766at 2924.868 kb on - strandat 2924.944 kb on + strand, within Dsui_2766at 2925.008 kb on + strand, within Dsui_2766at 2925.107 kb on + strand, within Dsui_2766at 2925.210 kb on + strandat 2925.233 kb on + strandat 2925.290 kb on + strandat 2925.290 kb on + strandat 2925.290 kb on + strandat 2925.305 kb on + strandat 2925.313 kb on - strandat 2925.362 kb on + strandat 2925.370 kb on - strandat 2925.475 kb on + strandat 2925.503 kb on + strand, within Dsui_2767at 2925.565 kb on + strand, within Dsui_2767at 2925.565 kb on + strand, within Dsui_2767at 2925.575 kb on + strand, within Dsui_2767at 2925.575 kb on + strand, within Dsui_2767at 2925.583 kb on - strandat 2925.916 kb on + strandat 2925.918 kb on - strandat 2925.990 kb on + strand, within Dsui_2768at 2926.030 kb on + strand, within Dsui_2768at 2926.097 kb on + strand, within Dsui_2768at 2926.271 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
2,923,370 - Dsui_2764 0.61 +0.7
2,923,493 + +0.7
2,923,501 - -2.3
2,923,510 + -1.7
2,923,511 - +0.7
2,923,555 + Dsui_2765 0.11 -1.3
2,923,597 + Dsui_2765 0.17 -0.3
2,923,696 - Dsui_2765 0.30 +0.7
2,923,788 - Dsui_2765 0.42 -1.3
2,923,799 - Dsui_2765 0.43 +0.7
2,923,822 + Dsui_2765 0.47 -0.9
2,923,887 + Dsui_2765 0.55 +0.7
2,924,057 + Dsui_2765 0.78 -0.3
2,924,139 - Dsui_2765 0.89 -0.3
2,924,139 - Dsui_2765 0.89 +0.7
2,924,159 + +0.7
2,924,209 - -1.6
2,924,270 + -0.3
2,924,326 + -0.9
2,924,484 + Dsui_2766 0.18 -1.9
2,924,610 - +0.7
2,924,784 + Dsui_2766 0.48 +0.7
2,924,868 - -0.3
2,924,944 + Dsui_2766 0.64 +0.7
2,925,008 + Dsui_2766 0.70 -0.9
2,925,107 + Dsui_2766 0.80 -1.3
2,925,210 + +0.7
2,925,233 + -0.3
2,925,290 + -0.3
2,925,290 + +0.7
2,925,290 + -0.3
2,925,305 + -0.1
2,925,313 - -1.6
2,925,362 + -2.3
2,925,370 - +0.7
2,925,475 + -0.3
2,925,503 + Dsui_2767 0.33 -0.3
2,925,565 + Dsui_2767 0.49 -0.9
2,925,565 + Dsui_2767 0.49 -0.9
2,925,575 + Dsui_2767 0.51 +0.7
2,925,575 + Dsui_2767 0.51 -0.9
2,925,583 - +0.7
2,925,916 + +0.7
2,925,918 - -0.9
2,925,990 + Dsui_2768 0.11 +0.7
2,926,030 + Dsui_2768 0.14 -1.3
2,926,097 + Dsui_2768 0.20 -1.3
2,926,271 - +0.7

Or see this region's nucleotide sequence