Strain Fitness in Dechlorosoma suillum PS around Dsui_2588

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2587 and Dsui_2588 are separated by 22 nucleotidesDsui_2588 and Dsui_2589 are separated by 10 nucleotides Dsui_2587: Dsui_2587 - type IV secretory pathway, VirB10 component, at 2,740,060 to 2,741,385 _2587 Dsui_2588: Dsui_2588 - type IV secretory pathway, VirB9 component, at 2,741,408 to 2,742,262 _2588 Dsui_2589: Dsui_2589 - type II secretory pathway, component PulD, at 2,742,273 to 2,743,994 _2589 Position (kb) 2741 2742 2743Strain fitness (log2 ratio) -2 -1 0 1at 2740.471 kb on + strandat 2740.480 kb on - strand, within Dsui_2587at 2740.508 kb on - strand, within Dsui_2587at 2740.541 kb on + strand, within Dsui_2587at 2740.572 kb on - strand, within Dsui_2587at 2740.572 kb on - strand, within Dsui_2587at 2740.631 kb on - strand, within Dsui_2587at 2740.690 kb on - strand, within Dsui_2587at 2740.741 kb on - strand, within Dsui_2587at 2740.843 kb on + strand, within Dsui_2587at 2740.843 kb on + strand, within Dsui_2587at 2740.850 kb on + strand, within Dsui_2587at 2740.851 kb on - strand, within Dsui_2587at 2740.902 kb on - strand, within Dsui_2587at 2740.964 kb on - strand, within Dsui_2587at 2740.978 kb on + strand, within Dsui_2587at 2740.986 kb on - strand, within Dsui_2587at 2741.077 kb on + strand, within Dsui_2587at 2741.077 kb on + strand, within Dsui_2587at 2741.194 kb on + strand, within Dsui_2587at 2741.254 kb on + strandat 2741.266 kb on - strandat 2741.300 kb on + strandat 2741.308 kb on - strandat 2741.310 kb on + strandat 2741.318 kb on - strandat 2741.380 kb on + strandat 2741.931 kb on - strand, within Dsui_2588at 2742.097 kb on + strand, within Dsui_2588at 2742.240 kb on - strandat 2742.545 kb on + strand, within Dsui_2589at 2742.580 kb on - strand, within Dsui_2589

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,740,471 + +0.5
2,740,480 - Dsui_2587 0.32 -1.1
2,740,508 - Dsui_2587 0.34 -1.1
2,740,541 + Dsui_2587 0.36 -0.5
2,740,572 - Dsui_2587 0.39 -0.5
2,740,572 - Dsui_2587 0.39 +0.5
2,740,631 - Dsui_2587 0.43 +0.5
2,740,690 - Dsui_2587 0.48 +0.5
2,740,741 - Dsui_2587 0.51 -2.5
2,740,843 + Dsui_2587 0.59 +0.5
2,740,843 + Dsui_2587 0.59 -0.5
2,740,850 + Dsui_2587 0.60 +1.1
2,740,851 - Dsui_2587 0.60 -1.1
2,740,902 - Dsui_2587 0.63 +0.5
2,740,964 - Dsui_2587 0.68 -1.1
2,740,978 + Dsui_2587 0.69 +0.5
2,740,986 - Dsui_2587 0.70 -0.5
2,741,077 + Dsui_2587 0.77 -1.1
2,741,077 + Dsui_2587 0.77 +0.5
2,741,194 + Dsui_2587 0.86 -1.1
2,741,254 + +0.5
2,741,266 - +0.5
2,741,300 + -0.5
2,741,308 - -0.2
2,741,310 + -0.5
2,741,318 - -0.5
2,741,380 + +0.5
2,741,931 - Dsui_2588 0.61 -0.5
2,742,097 + Dsui_2588 0.81 -0.5
2,742,240 - -1.1
2,742,545 + Dsui_2589 0.16 -1.5
2,742,580 - Dsui_2589 0.18 +0.5

Or see this region's nucleotide sequence