Strain Fitness in Dechlorosoma suillum PS around Dsui_2005

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2004 and Dsui_2005 overlap by 4 nucleotidesDsui_2005 and Dsui_2006 are separated by 13 nucleotides Dsui_2004: Dsui_2004 - putative signal-transduction protein containing cAMP-binding and CBS domains, at 2,112,211 to 2,114,121 _2004 Dsui_2005: Dsui_2005 - DNA polymerase III epsilon subunit-like 3'-5' exonuclease, at 2,114,118 to 2,114,831 _2005 Dsui_2006: Dsui_2006 - putative sodium:solute symporter, VC_2705 subfamily, at 2,114,845 to 2,116,887 _2006 Position (kb) 2114 2115Strain fitness (log2 ratio) -3 -2 -1 0 1at 2113.196 kb on + strand, within Dsui_2004at 2113.417 kb on + strand, within Dsui_2004at 2113.483 kb on - strand, within Dsui_2004at 2113.509 kb on + strand, within Dsui_2004at 2113.556 kb on + strand, within Dsui_2004at 2113.812 kb on + strand, within Dsui_2004at 2113.870 kb on + strand, within Dsui_2004at 2114.029 kb on - strandat 2114.246 kb on - strandat 2114.262 kb on + strandat 2114.443 kb on + strand, within Dsui_2005at 2114.455 kb on + strand, within Dsui_2005at 2114.536 kb on - strand, within Dsui_2005at 2114.584 kb on + strand, within Dsui_2005at 2114.594 kb on + strand, within Dsui_2005at 2114.613 kb on - strand, within Dsui_2005at 2114.613 kb on - strandat 2114.698 kb on - strand, within Dsui_2005at 2114.892 kb on + strandat 2114.934 kb on - strandat 2114.942 kb on + strandat 2115.081 kb on + strand, within Dsui_2006at 2115.146 kb on - strand, within Dsui_2006at 2115.164 kb on + strandat 2115.549 kb on + strand, within Dsui_2006at 2115.577 kb on + strandat 2115.680 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,113,196 + Dsui_2004 0.52 +1.0
2,113,417 + Dsui_2004 0.63 +1.0
2,113,483 - Dsui_2004 0.67 +1.0
2,113,509 + Dsui_2004 0.68 -0.0
2,113,556 + Dsui_2004 0.70 +1.0
2,113,812 + Dsui_2004 0.84 -1.6
2,113,870 + Dsui_2004 0.87 -0.6
2,114,029 - -0.6
2,114,246 - +0.9
2,114,262 + +0.9
2,114,443 + Dsui_2005 0.46 -0.6
2,114,455 + Dsui_2005 0.47 +0.9
2,114,536 - Dsui_2005 0.59 -0.6
2,114,584 + Dsui_2005 0.65 -3.1
2,114,594 + Dsui_2005 0.67 -0.1
2,114,613 - Dsui_2005 0.69 +0.9
2,114,613 - +0.9
2,114,698 - Dsui_2005 0.81 +0.9
2,114,892 + +0.9
2,114,934 - -0.1
2,114,942 + +0.9
2,115,081 + Dsui_2006 0.12 -0.1
2,115,146 - Dsui_2006 0.15 -1.1
2,115,164 + -0.1
2,115,549 + Dsui_2006 0.34 -0.1
2,115,577 + +0.9
2,115,680 - -0.1

Or see this region's nucleotide sequence