Strain Fitness in Dechlorosoma suillum PS around Dsui_1971

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1969 and Dsui_1970 overlap by 4 nucleotidesDsui_1970 and Dsui_1971 are separated by 10 nucleotidesDsui_1971 and Dsui_1972 are separated by 52 nucleotides Dsui_1969: Dsui_1969 - protein-L-isoaspartate and D-aspartate O-methyltransferase, at 2,077,202 to 2,077,876 _1969 Dsui_1970: Dsui_1970 - metalloendopeptidase-like membrane protein, at 2,077,873 to 2,078,781 _1970 Dsui_1971: Dsui_1971 - RNA polymerase sigma factor RpoS, at 2,078,792 to 2,079,778 _1971 Dsui_1972: Dsui_1972 - lytic murein transglycosylase B, at 2,079,831 to 2,080,862 _1972 Position (kb) 2078 2079 2080Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2077.808 kb on + strand, within Dsui_1969at 2077.869 kb on - strandat 2077.907 kb on + strandat 2077.972 kb on + strand, within Dsui_1970at 2077.989 kb on + strand, within Dsui_1970at 2078.056 kb on + strand, within Dsui_1970at 2078.078 kb on + strand, within Dsui_1970at 2078.305 kb on - strand, within Dsui_1970at 2078.307 kb on + strand, within Dsui_1970at 2078.307 kb on + strand, within Dsui_1970at 2078.307 kb on + strand, within Dsui_1970at 2078.315 kb on - strand, within Dsui_1970at 2078.482 kb on + strand, within Dsui_1970at 2078.539 kb on + strand, within Dsui_1970at 2078.573 kb on - strandat 2078.585 kb on - strand, within Dsui_1970at 2078.645 kb on + strand, within Dsui_1970at 2078.663 kb on + strand, within Dsui_1970at 2078.775 kb on + strandat 2078.784 kb on + strandat 2078.784 kb on + strandat 2078.784 kb on + strandat 2078.784 kb on + strandat 2078.869 kb on - strandat 2078.869 kb on - strandat 2078.872 kb on + strandat 2079.030 kb on - strand, within Dsui_1971at 2079.035 kb on - strand, within Dsui_1971at 2079.069 kb on + strand, within Dsui_1971at 2079.077 kb on - strand, within Dsui_1971at 2079.085 kb on + strand, within Dsui_1971at 2079.097 kb on + strand, within Dsui_1971at 2079.147 kb on + strand, within Dsui_1971at 2079.148 kb on + strand, within Dsui_1971at 2079.155 kb on - strandat 2079.185 kb on + strand, within Dsui_1971at 2079.209 kb on - strand, within Dsui_1971at 2079.227 kb on + strand, within Dsui_1971at 2079.345 kb on + strand, within Dsui_1971at 2079.353 kb on - strand, within Dsui_1971at 2079.377 kb on + strand, within Dsui_1971at 2079.415 kb on - strand, within Dsui_1971at 2079.458 kb on - strand, within Dsui_1971at 2079.480 kb on + strand, within Dsui_1971at 2079.488 kb on + strand, within Dsui_1971at 2079.496 kb on - strand, within Dsui_1971at 2079.574 kb on - strand, within Dsui_1971at 2079.584 kb on - strand, within Dsui_1971at 2079.635 kb on - strand, within Dsui_1971at 2079.703 kb on + strandat 2079.709 kb on + strandat 2079.725 kb on - strandat 2079.813 kb on + strandat 2079.935 kb on + strandat 2080.081 kb on + strandat 2080.086 kb on + strandat 2080.094 kb on - strand, within Dsui_1972at 2080.108 kb on + strand, within Dsui_1972at 2080.155 kb on + strand, within Dsui_1972at 2080.201 kb on - strand, within Dsui_1972at 2080.277 kb on - strand, within Dsui_1972at 2080.280 kb on - strand, within Dsui_1972at 2080.319 kb on - strand, within Dsui_1972at 2080.319 kb on - strand, within Dsui_1972at 2080.366 kb on + strand, within Dsui_1972at 2080.510 kb on + strandat 2080.713 kb on + strand, within Dsui_1972

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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2,077,808 + Dsui_1969 0.90 -1.2
2,077,869 - +1.0
2,077,907 + -5.6
2,077,972 + Dsui_1970 0.11 -3.7
2,077,989 + Dsui_1970 0.13 -3.9
2,078,056 + Dsui_1970 0.20 -4.4
2,078,078 + Dsui_1970 0.23 -3.8
2,078,305 - Dsui_1970 0.48 +1.0
2,078,307 + Dsui_1970 0.48 -3.5
2,078,307 + Dsui_1970 0.48 -4.0
2,078,307 + Dsui_1970 0.48 -5.2
2,078,315 - Dsui_1970 0.49 +0.0
2,078,482 + Dsui_1970 0.67 -3.4
2,078,539 + Dsui_1970 0.73 -4.5
2,078,573 - +1.0
2,078,585 - Dsui_1970 0.78 -1.0
2,078,645 + Dsui_1970 0.85 -3.4
2,078,663 + Dsui_1970 0.87 -4.2
2,078,775 + +0.5
2,078,784 + +0.6
2,078,784 + +0.5
2,078,784 + +0.2
2,078,784 + +0.3
2,078,869 - -1.3
2,078,869 - +1.0
2,078,872 + +0.4
2,079,030 - Dsui_1971 0.24 +1.0
2,079,035 - Dsui_1971 0.25 +0.2
2,079,069 + Dsui_1971 0.28 +0.3
2,079,077 - Dsui_1971 0.29 +1.0
2,079,085 + Dsui_1971 0.30 +0.3
2,079,097 + Dsui_1971 0.31 +0.6
2,079,147 + Dsui_1971 0.36 +0.6
2,079,148 + Dsui_1971 0.36 +0.2
2,079,155 - +1.0
2,079,185 + Dsui_1971 0.40 -0.1
2,079,209 - Dsui_1971 0.42 +1.0
2,079,227 + Dsui_1971 0.44 +0.2
2,079,345 + Dsui_1971 0.56 +0.3
2,079,353 - Dsui_1971 0.57 +0.0
2,079,377 + Dsui_1971 0.59 +0.3
2,079,415 - Dsui_1971 0.63 -2.0
2,079,458 - Dsui_1971 0.67 +0.0
2,079,480 + Dsui_1971 0.70 +0.2
2,079,488 + Dsui_1971 0.71 +0.2
2,079,496 - Dsui_1971 0.71 -1.3
2,079,574 - Dsui_1971 0.79 -0.4
2,079,584 - Dsui_1971 0.80 -1.6
2,079,635 - Dsui_1971 0.85 -1.6
2,079,703 + +0.0
2,079,709 + +0.3
2,079,725 - +0.0
2,079,813 + -1.1
2,079,935 + +1.0
2,080,081 + -0.6
2,080,086 + +1.0
2,080,094 - Dsui_1972 0.25 +1.7
2,080,108 + Dsui_1972 0.27 +1.0
2,080,155 + Dsui_1972 0.31 -1.8
2,080,201 - Dsui_1972 0.36 +0.4
2,080,277 - Dsui_1972 0.43 -0.1
2,080,280 - Dsui_1972 0.44 +0.1
2,080,319 - Dsui_1972 0.47 -0.1
2,080,319 - Dsui_1972 0.47 +0.6
2,080,366 + Dsui_1972 0.52 -1.0
2,080,510 + +1.0
2,080,713 + Dsui_1972 0.85 +0.0

Or see this region's nucleotide sequence