Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1851 and Dsui_1852 are separated by 3 nucleotides Dsui_1852 and Dsui_1853 are separated by 215 nucleotides Dsui_1853 and Dsui_1854 are separated by 1 nucleotides
Dsui_1851: Dsui_1851 - signal transduction histidine kinase, at 1,945,413 to 1,946,837
_1851
Dsui_1852: Dsui_1852 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 1,946,841 to 1,947,530
_1852
Dsui_1853: Dsui_1853 - P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein, at 1,947,746 to 1,948,312
_1853
Dsui_1854: Dsui_1854 - hypothetical protein, at 1,948,314 to 1,949,579
_1854
Position (kb)
1946
1947
1948 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1945.922 kb on - strand, within Dsui_1851 at 1945.955 kb on + strand at 1946.037 kb on + strand at 1946.077 kb on + strand at 1946.095 kb on - strand, within Dsui_1851 at 1946.267 kb on - strand, within Dsui_1851 at 1946.316 kb on + strand at 1946.317 kb on + strand, within Dsui_1851 at 1946.340 kb on - strand, within Dsui_1851 at 1946.527 kb on + strand, within Dsui_1851 at 1946.575 kb on + strand, within Dsui_1851 at 1946.839 kb on + strand at 1946.917 kb on - strand at 1946.996 kb on + strand at 1947.005 kb on + strand, within Dsui_1852 at 1947.030 kb on + strand, within Dsui_1852 at 1947.188 kb on - strand, within Dsui_1852 at 1947.262 kb on - strand, within Dsui_1852 at 1947.561 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.617 kb on + strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.625 kb on - strand at 1947.644 kb on - strand at 1947.697 kb on + strand at 1947.783 kb on + strand at 1947.928 kb on + strand, within Dsui_1853 at 1947.929 kb on + strand, within Dsui_1853 at 1947.960 kb on + strand at 1948.009 kb on + strand at 1948.044 kb on - strand at 1948.111 kb on + strand at 1948.120 kb on - strand, within Dsui_1853 at 1948.130 kb on - strand at 1948.375 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,945,922 - Dsui_1851 0.36 -2.1 1,945,955 + +0.7 1,946,037 + -0.9 1,946,077 + -1.3 1,946,095 - Dsui_1851 0.48 -0.3 1,946,267 - Dsui_1851 0.60 -1.3 1,946,316 + +0.7 1,946,317 + Dsui_1851 0.63 -0.9 1,946,340 - Dsui_1851 0.65 +0.7 1,946,527 + Dsui_1851 0.78 -0.9 1,946,575 + Dsui_1851 0.82 -1.3 1,946,839 + -0.3 1,946,917 - +0.7 1,946,996 + -0.3 1,947,005 + Dsui_1852 0.24 -3.4 1,947,030 + Dsui_1852 0.27 -2.1 1,947,188 - Dsui_1852 0.50 -0.3 1,947,262 - Dsui_1852 0.61 -0.9 1,947,561 + -0.3 1,947,617 + -0.3 1,947,617 + +0.7 1,947,617 + +0.7 1,947,625 - -0.3 1,947,625 - -0.3 1,947,625 - -0.9 1,947,625 - +0.7 1,947,644 - +0.7 1,947,697 + +0.7 1,947,783 + -1.9 1,947,928 + Dsui_1853 0.32 -1.9 1,947,929 + Dsui_1853 0.32 -0.3 1,947,960 + +0.7 1,948,009 + +0.7 1,948,044 - -0.9 1,948,111 + +0.7 1,948,120 - Dsui_1853 0.66 -0.9 1,948,130 - +0.7 1,948,375 + +0.7
Or see this region's nucleotide sequence