Strain Fitness in Dechlorosoma suillum PS around Dsui_1798

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1796 and Dsui_1797 are separated by 77 nucleotidesDsui_1797 and Dsui_1798 are separated by 29 nucleotides Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614 _1796 Dsui_1797: Dsui_1797 - putative phage-type endonuclease, at 1,896,692 to 1,897,264 _1797 Dsui_1798: Dsui_1798 - DNA replication protein, at 1,897,294 to 1,898,028 _1798 Position (kb) 1897 1898 1899Strain fitness (log2 ratio) -1 0 1at 1896.336 kb on - strand, within Dsui_1796at 1896.404 kb on + strand, within Dsui_1796at 1896.422 kb on - strand, within Dsui_1796at 1896.423 kb on + strandat 1896.484 kb on - strandat 1896.484 kb on - strand, within Dsui_1796at 1896.587 kb on - strandat 1896.594 kb on + strandat 1896.600 kb on - strandat 1896.657 kb on - strandat 1896.669 kb on + strandat 1896.714 kb on - strandat 1896.722 kb on + strandat 1896.736 kb on - strandat 1896.774 kb on - strand, within Dsui_1797at 1896.801 kb on + strandat 1896.825 kb on - strandat 1896.834 kb on + strandat 1896.842 kb on - strand, within Dsui_1797at 1896.898 kb on + strand, within Dsui_1797at 1896.906 kb on - strand, within Dsui_1797at 1896.937 kb on + strandat 1896.947 kb on - strand, within Dsui_1797at 1896.948 kb on + strand, within Dsui_1797at 1896.983 kb on - strand, within Dsui_1797at 1897.014 kb on - strand, within Dsui_1797at 1897.042 kb on + strandat 1897.050 kb on - strand, within Dsui_1797at 1897.099 kb on - strand, within Dsui_1797at 1897.136 kb on - strand, within Dsui_1797at 1897.233 kb on + strandat 1897.241 kb on - strandat 1897.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,896,336 - Dsui_1796 0.71 -1.0
1,896,404 + Dsui_1796 0.78 +0.6
1,896,422 - Dsui_1796 0.80 +0.6
1,896,423 + +0.6
1,896,484 - +0.6
1,896,484 - Dsui_1796 0.86 +0.6
1,896,587 - +0.6
1,896,594 + +0.6
1,896,600 - +0.6
1,896,657 - -1.4
1,896,669 + +0.6
1,896,714 - -0.4
1,896,722 + -0.4
1,896,736 - +0.6
1,896,774 - Dsui_1797 0.14 +0.6
1,896,801 + +0.6
1,896,825 - -0.4
1,896,834 + +0.6
1,896,842 - Dsui_1797 0.26 -1.7
1,896,898 + Dsui_1797 0.36 +0.6
1,896,906 - Dsui_1797 0.37 -0.4
1,896,937 + +0.6
1,896,947 - Dsui_1797 0.45 -1.4
1,896,948 + Dsui_1797 0.45 -1.0
1,896,983 - Dsui_1797 0.51 -0.4
1,897,014 - Dsui_1797 0.56 +0.6
1,897,042 + +0.6
1,897,050 - Dsui_1797 0.62 +0.6
1,897,099 - Dsui_1797 0.71 -1.7
1,897,136 - Dsui_1797 0.77 +0.6
1,897,233 + -0.4
1,897,241 - +0.6
1,897,266 - +0.6

Or see this region's nucleotide sequence