Strain Fitness in Dechlorosoma suillum PS around Dsui_1671

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1670 and Dsui_1671 are separated by 8 nucleotidesDsui_1671 and Dsui_1672 are separated by 78 nucleotides Dsui_1670: Dsui_1670 - cytochrome c peroxidase, at 1,755,519 to 1,756,628 _1670 Dsui_1671: Dsui_1671 - outer membrane receptor for ferrienterochelin and colicins, at 1,756,637 to 1,759,483 _1671 Dsui_1672: Dsui_1672 - Fe2+-dicitrate sensor, membrane component, at 1,759,562 to 1,760,494 _1672 Position (kb) 1756 1757 1758 1759 1760Strain fitness (log2 ratio) -2 -1 0 1at 1755.676 kb on + strandat 1755.684 kb on - strand, within Dsui_1670at 1755.717 kb on + strand, within Dsui_1670at 1755.782 kb on + strandat 1755.835 kb on - strand, within Dsui_1670at 1755.913 kb on - strandat 1756.039 kb on - strand, within Dsui_1670at 1756.057 kb on + strandat 1756.214 kb on - strandat 1756.351 kb on - strand, within Dsui_1670at 1756.351 kb on - strand, within Dsui_1670at 1756.443 kb on + strandat 1756.568 kb on - strandat 1756.740 kb on + strandat 1756.826 kb on - strandat 1756.865 kb on + strandat 1756.968 kb on - strandat 1756.985 kb on - strand, within Dsui_1671at 1757.179 kb on + strandat 1757.180 kb on + strand, within Dsui_1671at 1757.185 kb on + strand, within Dsui_1671at 1757.185 kb on + strand, within Dsui_1671at 1757.193 kb on - strandat 1757.220 kb on + strand, within Dsui_1671at 1757.269 kb on + strandat 1757.269 kb on + strand, within Dsui_1671at 1757.273 kb on + strand, within Dsui_1671at 1757.274 kb on + strand, within Dsui_1671at 1757.277 kb on - strand, within Dsui_1671at 1757.287 kb on - strandat 1757.338 kb on - strandat 1757.400 kb on + strand, within Dsui_1671at 1757.415 kb on + strandat 1757.415 kb on + strand, within Dsui_1671at 1757.415 kb on + strandat 1757.423 kb on - strandat 1757.468 kb on + strand, within Dsui_1671at 1757.475 kb on - strandat 1757.476 kb on - strandat 1757.569 kb on + strand, within Dsui_1671at 1757.607 kb on - strand, within Dsui_1671at 1757.638 kb on + strand, within Dsui_1671at 1757.719 kb on + strand, within Dsui_1671at 1757.719 kb on + strandat 1757.755 kb on + strandat 1757.806 kb on - strandat 1757.832 kb on + strand, within Dsui_1671at 1757.842 kb on + strand, within Dsui_1671at 1757.850 kb on - strand, within Dsui_1671at 1757.850 kb on - strand, within Dsui_1671at 1757.912 kb on + strand, within Dsui_1671at 1757.920 kb on - strandat 1757.929 kb on + strandat 1758.202 kb on - strand, within Dsui_1671at 1758.212 kb on - strandat 1758.213 kb on - strand, within Dsui_1671at 1758.235 kb on - strandat 1758.272 kb on - strandat 1758.277 kb on + strand, within Dsui_1671at 1758.285 kb on - strandat 1758.364 kb on - strandat 1758.365 kb on + strandat 1758.407 kb on + strandat 1758.636 kb on + strand, within Dsui_1671at 1758.828 kb on + strand, within Dsui_1671at 1758.855 kb on - strand, within Dsui_1671at 1759.304 kb on + strandat 1759.450 kb on - strandat 1759.537 kb on + strandat 1759.537 kb on + strandat 1760.430 kb on + strandat 1760.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,755,676 + +0.4
1,755,684 - Dsui_1670 0.15 -0.6
1,755,717 + Dsui_1670 0.18 -1.1
1,755,782 + -1.1
1,755,835 - Dsui_1670 0.28 -2.6
1,755,913 - -1.1
1,756,039 - Dsui_1670 0.47 -0.6
1,756,057 + -0.6
1,756,214 - -0.6
1,756,351 - Dsui_1670 0.75 -1.1
1,756,351 - Dsui_1670 0.75 -0.6
1,756,443 + -0.6
1,756,568 - +0.4
1,756,740 + -0.6
1,756,826 - -1.9
1,756,865 + -0.6
1,756,968 - +0.4
1,756,985 - Dsui_1671 0.12 -0.6
1,757,179 + -0.6
1,757,180 + Dsui_1671 0.19 -0.2
1,757,185 + Dsui_1671 0.19 -1.2
1,757,185 + Dsui_1671 0.19 -1.6
1,757,193 - -0.6
1,757,220 + Dsui_1671 0.20 -0.6
1,757,269 + +0.4
1,757,269 + Dsui_1671 0.22 +0.4
1,757,273 + Dsui_1671 0.22 -0.6
1,757,274 + Dsui_1671 0.22 -1.5
1,757,277 - Dsui_1671 0.22 -0.6
1,757,287 - -0.6
1,757,338 - +0.4
1,757,400 + Dsui_1671 0.27 +0.4
1,757,415 + +0.4
1,757,415 + Dsui_1671 0.27 -1.2
1,757,415 + -0.6
1,757,423 - +0.4
1,757,468 + Dsui_1671 0.29 -1.2
1,757,475 - -0.6
1,757,476 - +0.4
1,757,569 + Dsui_1671 0.33 -1.9
1,757,607 - Dsui_1671 0.34 -1.2
1,757,638 + Dsui_1671 0.35 -1.2
1,757,719 + Dsui_1671 0.38 -2.2
1,757,719 + +0.4
1,757,755 + -0.6
1,757,806 - -1.6
1,757,832 + Dsui_1671 0.42 -1.6
1,757,842 + Dsui_1671 0.42 -0.6
1,757,850 - Dsui_1671 0.43 -1.2
1,757,850 - Dsui_1671 0.43 -1.6
1,757,912 + Dsui_1671 0.45 +0.4
1,757,920 - +0.4
1,757,929 + +0.4
1,758,202 - Dsui_1671 0.55 +0.4
1,758,212 - -0.6
1,758,213 - Dsui_1671 0.55 -1.6
1,758,235 - +0.4
1,758,272 - +0.4
1,758,277 + Dsui_1671 0.58 +0.4
1,758,285 - +0.4
1,758,364 - +0.4
1,758,365 + +0.4
1,758,407 + -0.6
1,758,636 + Dsui_1671 0.70 -1.9
1,758,828 + Dsui_1671 0.77 -2.4
1,758,855 - Dsui_1671 0.78 +0.4
1,759,304 + +0.4
1,759,450 - +0.4
1,759,537 + -0.6
1,759,537 + -0.6
1,760,430 + +0.4
1,760,465 - -1.6

Or see this region's nucleotide sequence