Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1647 and Dsui_1648 are separated by 129 nucleotides Dsui_1648 and Dsui_1649 are separated by 19 nucleotides Dsui_1649 and Dsui_1650 are separated by 183 nucleotides
Dsui_1647: Dsui_1647 - oxygen-independent coproporphyrinogen III oxidase, at 1,728,357 to 1,729,754
_1647
Dsui_1648: Dsui_1648 - hypothetical protein, at 1,729,884 to 1,730,570
_1648
Dsui_1649: Dsui_1649 - universal stress protein UspA-like protein, at 1,730,590 to 1,731,018
_1649
Dsui_1650: Dsui_1650 - copper/silver-translocating P-type ATPase, at 1,731,202 to 1,733,637
_1650
Position (kb)
1730
1731
1732 Strain fitness (log2 ratio)
-2
-1
0
1 at 1729.658 kb on + strand at 1729.797 kb on - strand at 1729.824 kb on - strand at 1729.849 kb on - strand at 1729.876 kb on + strand at 1730.800 kb on - strand, within Dsui_1649 at 1730.857 kb on + strand, within Dsui_1649 at 1730.906 kb on + strand, within Dsui_1649 at 1731.083 kb on + strand at 1731.127 kb on + strand at 1731.141 kb on + strand at 1731.142 kb on - strand at 1731.343 kb on - strand at 1731.369 kb on + strand at 1731.379 kb on + strand at 1731.387 kb on - strand at 1731.387 kb on - strand at 1731.423 kb on - strand at 1731.458 kb on + strand, within Dsui_1650 at 1731.517 kb on + strand, within Dsui_1650 at 1731.613 kb on - strand at 1731.741 kb on + strand, within Dsui_1650 at 1731.939 kb on + strand, within Dsui_1650 at 1731.978 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,729,658 + +0.5 1,729,797 - +0.4 1,729,824 - +0.4 1,729,849 - +0.4 1,729,876 + -1.8 1,730,800 - Dsui_1649 0.49 -0.6 1,730,857 + Dsui_1649 0.62 +1.0 1,730,906 + Dsui_1649 0.74 -0.4 1,731,083 + -0.6 1,731,127 + -0.3 1,731,141 + -0.5 1,731,142 - +0.4 1,731,343 - +0.4 1,731,369 + -1.5 1,731,379 + -0.3 1,731,387 - +0.4 1,731,387 - +0.4 1,731,423 - +0.4 1,731,458 + Dsui_1650 0.11 -2.4 1,731,517 + Dsui_1650 0.13 +0.9 1,731,613 - +0.4 1,731,741 + Dsui_1650 0.22 -0.3 1,731,939 + Dsui_1650 0.30 +0.3 1,731,978 - -1.2
Or see this region's nucleotide sequence