Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1372 and Dsui_1373 are separated by 142 nucleotides Dsui_1373 and Dsui_1374 are separated by 218 nucleotides
Dsui_1372: Dsui_1372 - methyl-accepting chemotaxis protein, at 1,425,264 to 1,426,883
_1372
Dsui_1373: Dsui_1373 - ATP-dependent helicase HrpA, at 1,427,026 to 1,430,988
_1373
Dsui_1374: Dsui_1374 - Protein of unknown function (DUF540), at 1,431,207 to 1,431,974
_1374
Position (kb)
1427
1428
1429
1430
1431 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1426.055 kb on + strand, within Dsui_1372 at 1426.325 kb on + strand, within Dsui_1372 at 1426.369 kb on + strand, within Dsui_1372 at 1426.377 kb on - strand, within Dsui_1372 at 1426.386 kb on - strand, within Dsui_1372 at 1426.401 kb on - strand, within Dsui_1372 at 1426.474 kb on - strand, within Dsui_1372 at 1426.479 kb on - strand, within Dsui_1372 at 1426.481 kb on + strand, within Dsui_1372 at 1426.486 kb on + strand, within Dsui_1372 at 1426.566 kb on + strand, within Dsui_1372 at 1426.588 kb on - strand, within Dsui_1372 at 1426.644 kb on - strand, within Dsui_1372 at 1426.668 kb on - strand, within Dsui_1372 at 1426.735 kb on - strand at 1426.745 kb on + strand at 1426.789 kb on - strand at 1426.811 kb on - strand at 1426.814 kb on + strand at 1426.814 kb on + strand at 1426.891 kb on + strand at 1426.959 kb on - strand at 1426.988 kb on + strand at 1426.998 kb on + strand at 1427.013 kb on + strand at 1427.014 kb on + strand at 1427.021 kb on - strand at 1427.113 kb on + strand at 1427.146 kb on - strand at 1427.225 kb on + strand at 1427.228 kb on + strand at 1427.332 kb on - strand at 1427.405 kb on - strand at 1427.423 kb on + strand, within Dsui_1373 at 1427.537 kb on - strand, within Dsui_1373 at 1427.655 kb on + strand, within Dsui_1373 at 1427.689 kb on - strand, within Dsui_1373 at 1427.712 kb on + strand, within Dsui_1373 at 1427.758 kb on + strand, within Dsui_1373 at 1427.822 kb on - strand, within Dsui_1373 at 1427.827 kb on - strand, within Dsui_1373 at 1427.926 kb on - strand at 1428.006 kb on - strand, within Dsui_1373 at 1428.058 kb on + strand, within Dsui_1373 at 1428.150 kb on - strand, within Dsui_1373 at 1428.166 kb on + strand, within Dsui_1373 at 1428.166 kb on + strand, within Dsui_1373 at 1428.183 kb on + strand, within Dsui_1373 at 1428.183 kb on + strand, within Dsui_1373 at 1428.191 kb on - strand at 1428.286 kb on + strand, within Dsui_1373 at 1428.371 kb on + strand, within Dsui_1373 at 1428.449 kb on - strand, within Dsui_1373 at 1428.496 kb on - strand, within Dsui_1373 at 1428.529 kb on - strand, within Dsui_1373 at 1428.599 kb on + strand, within Dsui_1373 at 1428.639 kb on - strand, within Dsui_1373 at 1428.751 kb on - strand at 1428.757 kb on + strand, within Dsui_1373 at 1429.064 kb on - strand, within Dsui_1373 at 1429.064 kb on - strand, within Dsui_1373 at 1429.124 kb on + strand, within Dsui_1373 at 1429.378 kb on - strand, within Dsui_1373 at 1429.519 kb on - strand, within Dsui_1373 at 1429.542 kb on + strand, within Dsui_1373 at 1429.620 kb on - strand, within Dsui_1373 at 1429.638 kb on - strand, within Dsui_1373 at 1429.672 kb on + strand, within Dsui_1373 at 1429.688 kb on + strand, within Dsui_1373 at 1429.700 kb on + strand, within Dsui_1373 at 1429.701 kb on - strand, within Dsui_1373 at 1429.723 kb on + strand, within Dsui_1373 at 1429.790 kb on - strand, within Dsui_1373 at 1429.811 kb on - strand, within Dsui_1373 at 1429.947 kb on - strand, within Dsui_1373 at 1429.957 kb on - strand, within Dsui_1373 at 1430.112 kb on + strand, within Dsui_1373 at 1430.221 kb on - strand, within Dsui_1373 at 1430.298 kb on - strand, within Dsui_1373 at 1430.300 kb on + strand, within Dsui_1373 at 1430.448 kb on + strand, within Dsui_1373 at 1430.526 kb on + strand, within Dsui_1373 at 1430.611 kb on + strand at 1430.631 kb on + strand at 1430.662 kb on + strand at 1430.679 kb on + strand at 1430.754 kb on + strand at 1430.808 kb on - strand at 1430.825 kb on + strand at 1430.981 kb on - strand at 1431.064 kb on + strand at 1431.072 kb on - strand at 1431.110 kb on + strand at 1431.151 kb on + strand at 1431.333 kb on - strand, within Dsui_1374 at 1431.405 kb on - strand, within Dsui_1374 at 1431.584 kb on - strand, within Dsui_1374 at 1431.623 kb on - strand, within Dsui_1374 at 1431.628 kb on - strand, within Dsui_1374 at 1431.652 kb on + strand, within Dsui_1374 at 1431.684 kb on + strand, within Dsui_1374 at 1431.725 kb on - strand, within Dsui_1374 at 1431.778 kb on - strand, within Dsui_1374 at 1431.798 kb on + strand, within Dsui_1374 at 1431.860 kb on + strand, within Dsui_1374 at 1431.955 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,426,055 + Dsui_1372 0.49 -1.5 1,426,325 + Dsui_1372 0.65 -0.5 1,426,369 + Dsui_1372 0.68 -1.9 1,426,377 - Dsui_1372 0.69 -0.0 1,426,386 - Dsui_1372 0.69 -1.2 1,426,401 - Dsui_1372 0.70 -1.1 1,426,474 - Dsui_1372 0.75 -0.0 1,426,479 - Dsui_1372 0.75 -0.3 1,426,481 + Dsui_1372 0.75 -0.5 1,426,486 + Dsui_1372 0.75 +0.5 1,426,566 + Dsui_1372 0.80 -1.1 1,426,588 - Dsui_1372 0.82 -1.5 1,426,644 - Dsui_1372 0.85 -0.7 1,426,668 - Dsui_1372 0.87 -0.6 1,426,735 - -1.3 1,426,745 + -2.1 1,426,789 - -1.5 1,426,811 - -1.5 1,426,814 + -1.5 1,426,814 + +0.5 1,426,891 + +0.5 1,426,959 - -0.5 1,426,988 + -0.5 1,426,998 + -0.5 1,427,013 + -0.5 1,427,014 + -0.5 1,427,021 - +0.5 1,427,113 + +0.1 1,427,146 - +0.5 1,427,225 + -0.1 1,427,228 + +0.5 1,427,332 - +0.5 1,427,405 - +0.5 1,427,423 + Dsui_1373 0.10 -0.7 1,427,537 - Dsui_1373 0.13 -2.3 1,427,655 + Dsui_1373 0.16 -0.4 1,427,689 - Dsui_1373 0.17 -1.1 1,427,712 + Dsui_1373 0.17 -0.3 1,427,758 + Dsui_1373 0.18 -0.6 1,427,822 - Dsui_1373 0.20 -0.5 1,427,827 - Dsui_1373 0.20 -0.5 1,427,926 - +0.5 1,428,006 - Dsui_1373 0.25 -1.9 1,428,058 + Dsui_1373 0.26 -0.5 1,428,150 - Dsui_1373 0.28 -1.1 1,428,166 + Dsui_1373 0.29 -0.3 1,428,166 + Dsui_1373 0.29 -0.4 1,428,183 + Dsui_1373 0.29 -0.3 1,428,183 + Dsui_1373 0.29 -0.0 1,428,191 - +0.5 1,428,286 + Dsui_1373 0.32 -0.3 1,428,371 + Dsui_1373 0.34 -0.3 1,428,449 - Dsui_1373 0.36 -0.5 1,428,496 - Dsui_1373 0.37 -0.5 1,428,529 - Dsui_1373 0.38 -0.5 1,428,599 + Dsui_1373 0.40 -0.5 1,428,639 - Dsui_1373 0.41 +0.5 1,428,751 - +0.5 1,428,757 + Dsui_1373 0.44 -1.2 1,429,064 - Dsui_1373 0.51 +0.5 1,429,064 - Dsui_1373 0.51 -1.9 1,429,124 + Dsui_1373 0.53 -0.5 1,429,378 - Dsui_1373 0.59 +0.5 1,429,519 - Dsui_1373 0.63 -1.1 1,429,542 + Dsui_1373 0.63 -0.8 1,429,620 - Dsui_1373 0.65 -0.5 1,429,638 - Dsui_1373 0.66 -1.1 1,429,672 + Dsui_1373 0.67 -0.2 1,429,688 + Dsui_1373 0.67 -0.5 1,429,700 + Dsui_1373 0.67 -0.7 1,429,701 - Dsui_1373 0.67 -1.5 1,429,723 + Dsui_1373 0.68 -0.5 1,429,790 - Dsui_1373 0.70 -1.1 1,429,811 - Dsui_1373 0.70 +0.5 1,429,947 - Dsui_1373 0.74 -2.9 1,429,957 - Dsui_1373 0.74 +1.5 1,430,112 + Dsui_1373 0.78 -0.1 1,430,221 - Dsui_1373 0.81 +0.5 1,430,298 - Dsui_1373 0.83 -1.1 1,430,300 + Dsui_1373 0.83 -0.5 1,430,448 + Dsui_1373 0.86 -0.6 1,430,526 + Dsui_1373 0.88 -0.8 1,430,611 + -1.0 1,430,631 + -0.8 1,430,662 + -0.2 1,430,679 + -0.4 1,430,754 + -0.8 1,430,808 - +0.5 1,430,825 + -0.2 1,430,981 - -0.5 1,431,064 + +0.2 1,431,072 - -1.5 1,431,110 + -0.9 1,431,151 + -0.3 1,431,333 - Dsui_1374 0.16 -1.1 1,431,405 - Dsui_1374 0.26 -1.1 1,431,584 - Dsui_1374 0.49 -0.5 1,431,623 - Dsui_1374 0.54 -0.5 1,431,628 - Dsui_1374 0.55 -1.9 1,431,652 + Dsui_1374 0.58 -0.7 1,431,684 + Dsui_1374 0.62 -0.3 1,431,725 - Dsui_1374 0.67 +0.5 1,431,778 - Dsui_1374 0.74 -1.1 1,431,798 + Dsui_1374 0.77 -0.1 1,431,860 + Dsui_1374 0.85 -0.7 1,431,955 + +0.1
Or see this region's nucleotide sequence