Strain Fitness in Dechlorosoma suillum PS around Dsui_1302

Experiment: pyruvate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1300 and Dsui_1301 are separated by 46 nucleotidesDsui_1301 and Dsui_1302 overlap by 4 nucleotidesDsui_1302 and Dsui_1303 are separated by 3 nucleotidesDsui_1303 and Dsui_1304 are separated by 178 nucleotides Dsui_1300: Dsui_1300 - sulfite oxidase-like oxidoreductase, at 1,363,222 to 1,364,160 _1300 Dsui_1301: Dsui_1301 - putative transmembrane transcriptional regulator (anti-sigma factor), at 1,364,207 to 1,364,983 _1301 Dsui_1302: Dsui_1302 - RNA polymerase sigma factor, sigma-70 family, at 1,364,980 to 1,365,480 _1302 Dsui_1303: Dsui_1303 - hypothetical protein, at 1,365,484 to 1,365,864 _1303 Dsui_1304: Dsui_1304 - cytochrome c553, at 1,366,043 to 1,366,684 _1304 Position (kb) 1364 1365 1366Strain fitness (log2 ratio) -3 -2 -1 0 1at 1363.992 kb on - strand, within Dsui_1300at 1363.999 kb on - strand, within Dsui_1300at 1364.006 kb on - strand, within Dsui_1300at 1364.040 kb on + strandat 1364.048 kb on - strand, within Dsui_1300at 1364.048 kb on - strand, within Dsui_1300at 1364.050 kb on + strand, within Dsui_1300at 1364.058 kb on - strand, within Dsui_1300at 1364.068 kb on + strandat 1364.075 kb on + strandat 1364.075 kb on + strandat 1364.085 kb on + strandat 1364.088 kb on - strandat 1364.093 kb on - strandat 1364.182 kb on - strandat 1364.187 kb on - strandat 1364.197 kb on - strandat 1364.233 kb on + strandat 1364.244 kb on - strandat 1364.254 kb on + strandat 1364.254 kb on + strandat 1364.262 kb on - strandat 1364.262 kb on - strandat 1364.267 kb on - strandat 1364.267 kb on - strandat 1364.267 kb on - strandat 1364.290 kb on - strand, within Dsui_1301at 1364.381 kb on + strand, within Dsui_1301at 1364.383 kb on + strand, within Dsui_1301at 1364.391 kb on - strand, within Dsui_1301at 1364.557 kb on + strand, within Dsui_1301at 1364.575 kb on - strand, within Dsui_1301at 1364.635 kb on - strand, within Dsui_1301at 1364.640 kb on + strand, within Dsui_1301at 1364.663 kb on + strand, within Dsui_1301at 1364.725 kb on + strand, within Dsui_1301at 1364.738 kb on - strand, within Dsui_1301at 1364.840 kb on + strand, within Dsui_1301at 1364.840 kb on + strand, within Dsui_1301at 1364.840 kb on + strandat 1364.840 kb on + strand, within Dsui_1301at 1364.845 kb on + strand, within Dsui_1301at 1364.848 kb on - strand, within Dsui_1301at 1364.903 kb on + strand, within Dsui_1301at 1364.945 kb on + strandat 1364.945 kb on + strandat 1364.969 kb on + strandat 1364.992 kb on + strandat 1365.031 kb on + strand, within Dsui_1302at 1365.099 kb on - strand, within Dsui_1302at 1365.099 kb on - strand, within Dsui_1302at 1365.195 kb on + strand, within Dsui_1302at 1365.203 kb on - strand, within Dsui_1302at 1365.203 kb on - strand, within Dsui_1302at 1365.203 kb on - strandat 1365.372 kb on + strand, within Dsui_1302at 1365.380 kb on - strand, within Dsui_1302at 1365.380 kb on - strand, within Dsui_1302at 1365.423 kb on + strand, within Dsui_1302at 1365.569 kb on + strand, within Dsui_1303at 1365.570 kb on - strand, within Dsui_1303at 1365.630 kb on - strand, within Dsui_1303at 1365.740 kb on - strand, within Dsui_1303at 1365.771 kb on + strand, within Dsui_1303at 1365.781 kb on + strand, within Dsui_1303at 1365.842 kb on - strandat 1365.868 kb on + strandat 1365.873 kb on + strandat 1365.878 kb on + strandat 1365.878 kb on + strandat 1365.886 kb on - strandat 1365.949 kb on + strandat 1365.952 kb on + strandat 1365.954 kb on + strandat 1365.957 kb on - strandat 1366.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
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1,363,992 - Dsui_1300 0.82 -0.3
1,363,999 - Dsui_1300 0.83 -0.2
1,364,006 - Dsui_1300 0.83 -0.4
1,364,040 + -1.1
1,364,048 - Dsui_1300 0.88 -0.2
1,364,048 - Dsui_1300 0.88 -0.6
1,364,050 + Dsui_1300 0.88 +0.5
1,364,058 - Dsui_1300 0.89 -0.2
1,364,068 + +0.5
1,364,075 + +0.5
1,364,075 + -1.8
1,364,085 + +0.5
1,364,088 - -0.3
1,364,093 - -0.1
1,364,182 - -0.4
1,364,187 - -1.0
1,364,197 - -1.7
1,364,233 + -0.5
1,364,244 - -0.3
1,364,254 + -0.5
1,364,254 + -0.5
1,364,262 - -0.6
1,364,262 - +0.0
1,364,267 - -0.3
1,364,267 - -0.6
1,364,267 - -0.4
1,364,290 - Dsui_1301 0.11 -0.4
1,364,381 + Dsui_1301 0.22 +0.5
1,364,383 + Dsui_1301 0.23 -1.5
1,364,391 - Dsui_1301 0.24 -0.5
1,364,557 + Dsui_1301 0.45 -0.5
1,364,575 - Dsui_1301 0.47 -0.7
1,364,635 - Dsui_1301 0.55 -0.5
1,364,640 + Dsui_1301 0.56 -0.5
1,364,663 + Dsui_1301 0.59 -2.1
1,364,725 + Dsui_1301 0.67 -1.1
1,364,738 - Dsui_1301 0.68 -1.0
1,364,840 + Dsui_1301 0.81 -0.5
1,364,840 + Dsui_1301 0.81 -0.5
1,364,840 + +0.5
1,364,840 + Dsui_1301 0.81 +0.5
1,364,845 + Dsui_1301 0.82 -2.3
1,364,848 - Dsui_1301 0.82 -0.3
1,364,903 + Dsui_1301 0.90 +0.5
1,364,945 + -1.8
1,364,945 + -0.5
1,364,969 + +0.5
1,364,992 + +0.5
1,365,031 + Dsui_1302 0.10 +0.5
1,365,099 - Dsui_1302 0.24 -3.2
1,365,099 - Dsui_1302 0.24 -3.1
1,365,195 + Dsui_1302 0.43 -1.8
1,365,203 - Dsui_1302 0.45 +0.5
1,365,203 - Dsui_1302 0.45 -0.5
1,365,203 - +0.5
1,365,372 + Dsui_1302 0.78 -1.5
1,365,380 - Dsui_1302 0.80 -0.1
1,365,380 - Dsui_1302 0.80 -1.5
1,365,423 + Dsui_1302 0.88 +0.5
1,365,569 + Dsui_1303 0.22 -1.8
1,365,570 - Dsui_1303 0.23 +0.9
1,365,630 - Dsui_1303 0.38 -1.5
1,365,740 - Dsui_1303 0.67 -0.6
1,365,771 + Dsui_1303 0.75 -1.5
1,365,781 + Dsui_1303 0.78 -0.5
1,365,842 - +0.1
1,365,868 + -3.0
1,365,873 + -0.5
1,365,878 + -1.5
1,365,878 + +0.5
1,365,886 - -0.6
1,365,949 + +0.5
1,365,952 + -3.1
1,365,954 + -2.3
1,365,957 - +0.2
1,366,049 - -0.1

Or see this region's nucleotide sequence