Experiment: pyruvate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1240 and Dsui_1241 are separated by 13 nucleotides Dsui_1241 and Dsui_1242 overlap by 4 nucleotides Dsui_1242 and Dsui_1243 are separated by 28 nucleotides
Dsui_1240: Dsui_1240 - dihydrofolate reductase, at 1,299,101 to 1,299,634
_1240
Dsui_1241: Dsui_1241 - hypothetical protein, at 1,299,648 to 1,300,391
_1241
Dsui_1242: Dsui_1242 - hypothetical protein, at 1,300,388 to 1,302,562
_1242
Dsui_1243: Dsui_1243 - hypothetical protein, at 1,302,591 to 1,303,937
_1243
Position (kb)
1300
1301
1302
1303 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1300.003 kb on + strand at 1300.003 kb on + strand at 1300.015 kb on + strand at 1300.096 kb on - strand, within Dsui_1241 at 1300.123 kb on + strand, within Dsui_1241 at 1300.181 kb on - strand at 1300.552 kb on - strand at 1300.563 kb on + strand at 1300.615 kb on + strand, within Dsui_1242 at 1300.649 kb on - strand, within Dsui_1242 at 1300.658 kb on + strand at 1300.785 kb on + strand at 1300.956 kb on + strand, within Dsui_1242 at 1300.968 kb on + strand, within Dsui_1242 at 1300.968 kb on + strand, within Dsui_1242 at 1300.968 kb on + strand at 1301.097 kb on - strand, within Dsui_1242 at 1301.127 kb on - strand, within Dsui_1242 at 1301.180 kb on + strand at 1301.273 kb on + strand at 1301.282 kb on + strand at 1301.297 kb on + strand at 1301.418 kb on - strand at 1301.469 kb on + strand, within Dsui_1242 at 1301.798 kb on + strand at 1301.806 kb on - strand, within Dsui_1242 at 1301.821 kb on + strand at 1301.844 kb on - strand, within Dsui_1242 at 1301.890 kb on - strand at 1301.900 kb on - strand at 1301.934 kb on - strand, within Dsui_1242 at 1301.934 kb on - strand at 1302.039 kb on + strand at 1302.047 kb on - strand, within Dsui_1242 at 1302.097 kb on - strand, within Dsui_1242 at 1302.195 kb on + strand at 1302.292 kb on + strand at 1302.348 kb on + strand at 1302.407 kb on - strand at 1302.435 kb on - strand at 1302.552 kb on - strand at 1302.637 kb on - strand at 1302.663 kb on + strand at 1302.934 kb on - strand, within Dsui_1243 at 1303.104 kb on - strand, within Dsui_1243 at 1303.109 kb on - strand, within Dsui_1243 at 1303.109 kb on - strand, within Dsui_1243 at 1303.111 kb on + strand, within Dsui_1243 at 1303.119 kb on - strand, within Dsui_1243 at 1303.119 kb on - strand, within Dsui_1243 at 1303.192 kb on + strand at 1303.200 kb on - strand, within Dsui_1243 at 1303.230 kb on + strand, within Dsui_1243 at 1303.335 kb on - strand, within Dsui_1243 at 1303.376 kb on + strand, within Dsui_1243 at 1303.411 kb on + strand at 1303.543 kb on - strand, within Dsui_1243
Per-strain Table
Position Strand Gene LocusTag Fraction pyruvate (C) remove 1,300,003 + +0.5 1,300,003 + -0.5 1,300,015 + -1.1 1,300,096 - Dsui_1241 0.60 +0.5 1,300,123 + Dsui_1241 0.64 -0.5 1,300,181 - +0.5 1,300,552 - -1.1 1,300,563 + +0.5 1,300,615 + Dsui_1242 0.10 -2.1 1,300,649 - Dsui_1242 0.12 -1.5 1,300,658 + +0.5 1,300,785 + +0.5 1,300,956 + Dsui_1242 0.26 -2.3 1,300,968 + Dsui_1242 0.27 -1.1 1,300,968 + Dsui_1242 0.27 -2.1 1,300,968 + -0.5 1,301,097 - Dsui_1242 0.33 -1.5 1,301,127 - Dsui_1242 0.34 -2.1 1,301,180 + +0.5 1,301,273 + -0.5 1,301,282 + -0.5 1,301,297 + +0.5 1,301,418 - +0.5 1,301,469 + Dsui_1242 0.50 -2.1 1,301,798 + -1.1 1,301,806 - Dsui_1242 0.65 -1.5 1,301,821 + -0.5 1,301,844 - Dsui_1242 0.67 -0.5 1,301,890 - -0.5 1,301,900 - +0.5 1,301,934 - Dsui_1242 0.71 -1.5 1,301,934 - -0.5 1,302,039 + -0.5 1,302,047 - Dsui_1242 0.76 -1.1 1,302,097 - Dsui_1242 0.79 -0.5 1,302,195 + -1.5 1,302,292 + +0.5 1,302,348 + +0.5 1,302,407 - -3.9 1,302,435 - -0.0 1,302,552 - -0.0 1,302,637 - +0.0 1,302,663 + -2.3 1,302,934 - Dsui_1243 0.25 -2.4 1,303,104 - Dsui_1243 0.38 -0.8 1,303,109 - Dsui_1243 0.38 -1.7 1,303,109 - Dsui_1243 0.38 -0.7 1,303,111 + Dsui_1243 0.39 +0.5 1,303,119 - Dsui_1243 0.39 -0.4 1,303,119 - Dsui_1243 0.39 +0.2 1,303,192 + +0.5 1,303,200 - Dsui_1243 0.45 -0.1 1,303,230 + Dsui_1243 0.47 -1.1 1,303,335 - Dsui_1243 0.55 -0.3 1,303,376 + Dsui_1243 0.58 +0.5 1,303,411 + +0.5 1,303,543 - Dsui_1243 0.71 -0.3
Or see this region's nucleotide sequence