Strain Fitness in Dechlorosoma suillum PS around Dsui_0866

Experiment: pyruvate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0865 and Dsui_0866 are separated by 269 nucleotidesDsui_0866 and Dsui_0867 are separated by 176 nucleotides Dsui_0865: Dsui_0865 - hypothetical protein, at 879,620 to 881,233 _0865 Dsui_0866: Dsui_0866 - hypothetical protein, at 881,503 to 883,098 _0866 Dsui_0867: Dsui_0867 - deoxyguanosinetriphosphate triphosphohydrolase, putative, at 883,275 to 884,651 _0867 Position (kb) 881 882 883 884Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 880.581 kb on + strand, within Dsui_0865at 880.626 kb on - strand, within Dsui_0865at 880.632 kb on - strand, within Dsui_0865at 880.667 kb on - strand, within Dsui_0865at 880.818 kb on + strandat 880.818 kb on + strand, within Dsui_0865at 880.818 kb on + strand, within Dsui_0865at 880.826 kb on - strand, within Dsui_0865at 880.826 kb on - strand, within Dsui_0865at 880.826 kb on - strand, within Dsui_0865at 880.826 kb on - strand, within Dsui_0865at 880.828 kb on + strandat 880.831 kb on - strand, within Dsui_0865at 880.836 kb on - strand, within Dsui_0865at 880.841 kb on - strandat 880.888 kb on - strandat 880.919 kb on + strand, within Dsui_0865at 880.927 kb on - strandat 880.993 kb on - strand, within Dsui_0865at 881.012 kb on + strandat 881.051 kb on - strandat 881.125 kb on - strandat 881.146 kb on - strandat 881.401 kb on - strandat 881.525 kb on + strandat 881.574 kb on - strandat 881.638 kb on - strandat 881.745 kb on + strand, within Dsui_0866at 881.805 kb on + strand, within Dsui_0866at 881.907 kb on + strand, within Dsui_0866at 881.907 kb on + strand, within Dsui_0866at 882.013 kb on - strand, within Dsui_0866at 882.081 kb on + strand, within Dsui_0866at 882.169 kb on + strand, within Dsui_0866at 882.185 kb on - strand, within Dsui_0866at 882.191 kb on + strand, within Dsui_0866at 882.444 kb on + strand, within Dsui_0866at 882.452 kb on - strand, within Dsui_0866at 882.462 kb on + strandat 882.512 kb on + strand, within Dsui_0866at 882.520 kb on - strand, within Dsui_0866at 882.520 kb on - strandat 882.614 kb on - strand, within Dsui_0866at 882.682 kb on - strand, within Dsui_0866at 882.799 kb on + strand, within Dsui_0866at 882.809 kb on - strand, within Dsui_0866at 882.822 kb on + strand, within Dsui_0866at 882.859 kb on - strand, within Dsui_0866at 882.939 kb on - strandat 882.976 kb on + strandat 882.984 kb on - strandat 883.007 kb on + strandat 883.015 kb on - strandat 883.015 kb on - strandat 883.088 kb on - strandat 883.103 kb on + strandat 883.106 kb on + strandat 883.107 kb on + strandat 883.152 kb on - strandat 883.261 kb on + strandat 883.305 kb on - strandat 883.334 kb on + strandat 883.397 kb on + strandat 883.423 kb on + strand, within Dsui_0867at 883.466 kb on - strandat 883.467 kb on + strand, within Dsui_0867at 883.475 kb on - strand, within Dsui_0867at 883.497 kb on - strand, within Dsui_0867at 883.540 kb on - strand, within Dsui_0867at 883.543 kb on + strand, within Dsui_0867at 883.550 kb on - strandat 883.748 kb on + strand, within Dsui_0867at 883.756 kb on - strand, within Dsui_0867at 883.843 kb on - strand, within Dsui_0867at 883.906 kb on + strand, within Dsui_0867at 883.914 kb on - strand, within Dsui_0867at 883.914 kb on - strand, within Dsui_0867at 883.939 kb on - strandat 883.941 kb on + strand, within Dsui_0867at 883.960 kb on - strandat 883.980 kb on - strandat 884.013 kb on + strand, within Dsui_0867at 884.035 kb on - strand, within Dsui_0867at 884.066 kb on - strand, within Dsui_0867

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction pyruvate (C)
remove
880,581 + Dsui_0865 0.60 -2.0
880,626 - Dsui_0865 0.62 -0.4
880,632 - Dsui_0865 0.63 +0.6
880,667 - Dsui_0865 0.65 -1.4
880,818 + +0.6
880,818 + Dsui_0865 0.74 -2.2
880,818 + Dsui_0865 0.74 -1.0
880,826 - Dsui_0865 0.75 -0.4
880,826 - Dsui_0865 0.75 -1.4
880,826 - Dsui_0865 0.75 +0.6
880,826 - Dsui_0865 0.75 +0.6
880,828 + +0.6
880,831 - Dsui_0865 0.75 -0.4
880,836 - Dsui_0865 0.75 -0.4
880,841 - +0.6
880,888 - -1.0
880,919 + Dsui_0865 0.80 -1.4
880,927 - +0.6
880,993 - Dsui_0865 0.85 -1.7
881,012 + -1.0
881,051 - +0.6
881,125 - -0.4
881,146 - +0.6
881,401 - -0.2
881,525 + +0.6
881,574 - +1.6
881,638 - -3.7
881,745 + Dsui_0866 0.15 -3.0
881,805 + Dsui_0866 0.19 -1.4
881,907 + Dsui_0866 0.25 -0.4
881,907 + Dsui_0866 0.25 -2.9
882,013 - Dsui_0866 0.32 -0.7
882,081 + Dsui_0866 0.36 -2.0
882,169 + Dsui_0866 0.42 -1.7
882,185 - Dsui_0866 0.43 -0.4
882,191 + Dsui_0866 0.43 -2.0
882,444 + Dsui_0866 0.59 -0.4
882,452 - Dsui_0866 0.59 -1.4
882,462 + -0.4
882,512 + Dsui_0866 0.63 +0.6
882,520 - Dsui_0866 0.64 -2.7
882,520 - +0.6
882,614 - Dsui_0866 0.70 -0.4
882,682 - Dsui_0866 0.74 +1.6
882,799 + Dsui_0866 0.81 -2.0
882,809 - Dsui_0866 0.82 -2.6
882,822 + Dsui_0866 0.83 -1.4
882,859 - Dsui_0866 0.85 -1.7
882,939 - -0.7
882,976 + -0.4
882,984 - +0.1
883,007 + +0.6
883,015 - -0.4
883,015 - -0.4
883,088 - -0.2
883,103 + +0.5
883,106 + -1.7
883,107 + -2.2
883,152 - -0.1
883,261 + +0.6
883,305 - -1.0
883,334 + +1.9
883,397 + +0.5
883,423 + Dsui_0867 0.11 -1.1
883,466 - +0.6
883,467 + Dsui_0867 0.14 -0.5
883,475 - Dsui_0867 0.15 -0.4
883,497 - Dsui_0867 0.16 -1.4
883,540 - Dsui_0867 0.19 -1.7
883,543 + Dsui_0867 0.19 +0.1
883,550 - +0.6
883,748 + Dsui_0867 0.34 -0.5
883,756 - Dsui_0867 0.35 -0.4
883,843 - Dsui_0867 0.41 +1.6
883,906 + Dsui_0867 0.46 +0.2
883,914 - Dsui_0867 0.46 -0.0
883,914 - Dsui_0867 0.46 -0.3
883,939 - +0.6
883,941 + Dsui_0867 0.48 -1.4
883,960 - +0.6
883,980 - +0.6
884,013 + Dsui_0867 0.54 +1.1
884,035 - Dsui_0867 0.55 -1.4
884,066 - Dsui_0867 0.57 -1.0

Or see this region's nucleotide sequence